Gene detail

Detailed information of aech_s0005.g246.t2 in Acropora echinata

Genomic Location: sc0000005_pilon:3575749...3589153
NR annotation: XP_029179271.2, adenylosuccinate synthetase isozyme 1 C-like [Acropora millepora]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

aech_s0005.g246.t2

GCTCCGTTAGCATTTTGATTCCGCAACTGCATATTTTATCGCCCGCATTTGTTTCCGAGGGAAAACGAAAGGTTAATGAGTGGCTACTAAGCCAAGTGAACGAATTGGCGCGGAAGCACAAGGAATTGTAGTTGTCTGCATTTAAACTTTAACCCTTAGCTAGCCTGTTTAATTTACACTGTTTCCACTTGGTGCGCCATGTCAGTCATACAGAATGGACGAAAATCACCGAAAGAGAAAACAGGAGCGAAAGTGACTGTGGTTTTAGGGGCGCAGTGGGGAGACGAAGGCAAGGGAAAGTTGGTCGATATCTTGTCCACTGATGCCGACCTTGTTTGCCGTTGTCAGGGTGGAAATAATGCTGGTCACACAGTGGTTGTTGAATCTAAGGAATATTTTTTTCACATGGTTCCAAGTGGATTGATACAGCCAAAAGCTGTCAGTGTTATTGGAAATGGCGTTGTCATTCATATACCACAGTTTTTTGAAGAGCTAGAAGCACTTGAAGCCAAAGGGGTAACAGATTGGCAAGGAAGACTTTTAGTCTCTGACAGAGCTCATATAGTATTTGATTTACACCAAGAGTCAGATAAATTAAGAGAAGGAGGGAAAGGAGGATTAGGAACCACAAAGAAGGGGATCGGACCAACTTATGCCTCAAAGGCACAGAGAATTGGTCTTAGAATATGTGATTTGGTTGGAGATTTTAACGTTTTTGAGCAAAAATTTCAAGGTCTGGTGTCACATTTCAAGAGACTATATCCAGATCTCAGTACAGATATTCAAGCGGAACTTGAAAAGTATAAGATTTATGCAGAAAAGATTCGTCCTCTTGTTTGTGACACAGTGAGTTACATGCACAAAGCTCTGCAGAATGAGTCTGCAAAAATTATAGTGGAGGGTGCCAATGCACTCATGCTGGATATTGACTTTGGTACTTACCCTTTTGTAACATCCTCTAGTTGTGCAGTTGGTGCAGTTTGTACAGGACTTGGCATTCCACCGACTGCCATTGGCAATGTTTATGGAGTCACTAAAGCGTACACAACACGTGTTGGTCGTGGAGGATTCCCAACAGAGCTGAAAGACGAGATTGGAGACAAGATGCAGCACATAGGAAGAGAGTTTGGAGTGACAACTGGCAGGAAACGAAGATGTGGCTGGCTTGATCTTGTAATGATCAGATACTCTCACATGATAAATAATTTTACAAGCCTTGTGATTGCCAAACTTGATGTTTTGGACACCTTTGAGGAGGTGAAGATTGGAATTTCATATAAGCATAAGGGAAAAGTGTTGGAATCCTTTCCTGCATCCGTGGAGATTTTGGACGAAATCGAAGTCGAGTATATCACTCTGCCTGGTTGGATGACCAGTATTAGCGACTGTAGATCATTTAGTGGATTGCCAGAAAACGCCCAAGCTTACATCAGAAAAATTGAAGAAATAACTCAAATTCCAGTGCAATGGGTTGGAGTTGGAAAATCACGAGATGATATGATATCCCTGTTTTAGCGAAAAAATGTGTGAAATGTAATTACGTAATGTCTTTTTAATATGAACTCTCGCACAACGAATATTTACTTTACATACAGGCATTTATTGACATGTTAGACTGCGAGTAGTCCCTAATTTCGGTGAGAGACAAACGGGCAGTCGAAATTCTCGGCGCTCCCGTCCCGTCGCGAGTCTTCCGGGTCTTCGCGACGCCTGTGTTCGGCCTCTCGCTTGTGTGTCGGAATTAGGGACTTCTCACGGTCTataggtggatttcatctgatgttggtgcacagaacaaaagagaaagaagtcttgggaatttgactctattattatgcaaaacataagccataatttgctagtgttttgtgcaccaacatggccgtctgattacgtcattgaaaacCACATCGTTTTCGAATCACACCACCAATTCCAATGGTGCTCAGTCTTAGTCAGATCGGATCGGCGATTCTGCAAAGTTATTGAAAGGCATCTGTCCTGCCGAACTGAGAATTGGTTTTGGACACAAGCTGTCGATGTTTTGCAGAACGCTAAACGACGGGTGATTTTAATGTTCTTCGGCTACTTGCTTCCGTAATGAAGAAGCGTGATTTCTGAGATGTTCTGATGGCACATCAGAGAACTATGGCTGCCTAAGTAGTAACTTTAGTAAAACAGAGGGCTATTAGGAGAAATCTCCATCTTTCACGTTTGGCCTTTATCCATTGGTTTGGcattagggagcttaagcaaacacga

Protein

Uniprot

Uniprot term	Description
Q561L1	Adenylosuccinate synthetase isozyme 1 A OS=Xenopus laevis OX=8355 GN=adss1-a PE=2 SV=1
B5DGM4	Adenylosuccinate synthetase isozyme 1 C OS=Salmo salar OX=8030 GN=adss1c PE=2 SV=1
A4Z6H1	Adenylosuccinate synthetase isozyme 2 OS=Sus scrofa OX=9823 GN=ADSS2 PE=2 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00709	Adenylsucc_synt	Adenylosuccinate synthetase	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR042110	Homologous_superfamily	Adenylosuccinate synthetase, domain 2	Interproscan
IPR042111	Homologous_superfamily	Adenylosuccinate synthetase, domain 3	Interproscan
IPR001114	Family	Adenylosuccinate synthetase	Interproscan
IPR042109	Homologous_superfamily	Adenylosuccinate synthetase, domain 1	Interproscan
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR033128	Active_site	Adenylosuccinate synthase, active site	Interproscan
IPR018220	Binding_site	Adenylosuccinate synthase, GTP-binding site	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11846	ADENYLOSUCCINATE SYNTHETASE	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000166	Molecular Function	nucleotide binding	Interproscan
GO:0004019	Molecular Function	adenylosuccinate synthase activity	Interproscan
GO:0006164	Biological Process	purine nucleotide biosynthetic process	Interproscan
GO:0005737	Cellular Component	cytoplasm	Interproscan
GO:0044208	Biological Process	'de novo' AMP biosynthetic process	Interproscan
GO:0046040	Biological Process	IMP metabolic process	Interproscan
GO:0005525	Molecular Function	GTP binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K01939	purA, ADSS; adenylosuccinate synthase	EC:6.3.4.4	Alanine, aspartate and glutamate metabolism	ko00250	deepkoala