Detailed information of aech_s0006.g234.t1 in Acropora echinata

Genomic Location: sc0000006_pilon:4712211...4767109
NR annotation: XP_029213827.2, uncharacterized protein LOC114977326 [Acropora millepora]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot
Uniprot termDescription
P49747Cartilage oligomeric matrix protein OS=Homo sapiens OX=9606 GN=COMP PE=1 SV=2
Q8JGW0Thrombospondin-4-B OS=Danio rerio OX=7955 GN=thbs4b PE=2 SV=1
Q1L8P7Thrombospondin-3b OS=Danio rerio OX=7955 GN=thbs3b PE=3 SV=1

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF13306LRR_5BspA type Leucine rich repeat region (6 copies)RepeatInterproscan
PF12947EGF_3EGF domainDomainInterproscan
PF13385Laminin_G_3Concanavalin A-like lectin/glucanases superfamilyDomainInterproscan
PF05735TSP_CThrombospondin C-terminal regionFamilyInterproscan
PF13855LRR_8Leucine rich repeatRepeatInterproscan
PF02412TSP_3Thrombospondin type 3 repeatDomainInterproscan
PF07645EGF_CACalcium-binding EGF domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR032675Homologous_superfamilyLeucine-rich repeat domain superfamilyInterproscan
IPR013320Homologous_superfamilyConcanavalin A-like lectin/glucanase domain superfamilyInterproscan
IPR020894Conserved_siteCadherin conserved siteInterproscan
IPR001881DomainEGF-like calcium-binding domainInterproscan
IPR000742DomainEGF-like domainInterproscan
IPR026906RepeatBspA-type LRR regionInterproscan
IPR006558DomainLamG-like jellyroll foldInterproscan
IPR024731DomainEGF domainInterproscan
IPR008859DomainThrombospondin, C-terminalInterproscan
IPR018097Conserved_siteEGF-like calcium-binding, conserved siteInterproscan
IPR001611RepeatLeucine-rich repeatInterproscan
IPR028974Homologous_superfamilyTSP type-3 repeatInterproscan
IPR015919Homologous_superfamilyCadherin-like superfamilyInterproscan
IPR002126DomainCadherin-likeInterproscan
IPR003591RepeatLeucine-rich repeat, typical subtypeInterproscan
IPR003367RepeatThrombospondin, type 3-like repeatInterproscan
IPR017897RepeatThrombospondin, type 3 repeatInterproscan
IPR049883DomainNOTCH1 EGF-like calcium-binding domainInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR10199THROMBOSPONDINInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0005886Cellular Componentplasma membraneInterproscan
GO:0007155Biological Processcell adhesionInterproscan
GO:0005509Molecular Functioncalcium ion bindingInterproscan
GO:0062023Cellular Componentcollagen-containing extracellular matrixInterproscan
GO:0005576Cellular Componentextracellular regionInterproscan
GO:0005515Molecular Functionprotein bindingInterproscan
GO:0016020Cellular ComponentmembraneInterproscan
GO:0007156Biological Processhomophilic cell adhesion via plasma membrane adhesion moleculesInterproscan

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