Gene detail

Detailed information of aech_s0006.g86.t1 in Acropora echinata

Genomic Location: sc0000006_pilon:1301253...1307688
NR annotation: XP_015763742.1, PREDICTED: tumor necrosis factor receptor superfamily member 16-like [Acropora digitifera]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

aech_s0006.g86.t1

TTTATTCTCTTATCTCTTTTGCGAAAGAATCGAGACAGAGTTGGCAAAGCTGTTATCCAGCGCACGATTTTGCTGAGAAAGAAACATCTGAAGTCACTTAGCTGGCTTTCAATTGGACTTCTCCAATCGTTAAACGGGATTGTTTTCACTCGTTCTTTTTCCTTTTTTTCTGCGGTGATGGAACACTCGACGACCATTCTCAAGGCATTTTTGCTAGCCAATGTTCCACACCTCTCTTCTTCACACCCAACAAAGTGTGGACCATCACAATATACAGTATTCAACCCTCAAAACCAAGAGGAAATTGTCAAGTGCCAAGACTGTCCAACATGCCCAAGAGGTGAGGGTGTCCCTGAGCAATGTGGCAGCAGAGTTCCAGATGGAACATCCACGCAATGCAAACCTTGTGAACTTGGCAAAAGTTATTCAAACACAACTGACTCATCAACTTGCCTTTCCTGCCATGAGTGTGGAAAGAAGACTGTACTGCAGCAGTGCAGTCTAACTGAAAATCGTAAATGCGGAGAATGCCCTGCAAATTACTTCTTGGAGCGGCATCTTAATGACTGCGTGGAATGTTTCACATGCTGTAGTGATGTCCCAGAAAGTGAGCGAATGGAACAATGCGGCAAAGATCTTGGGTTGCCGGCATCCCAATGGTGTGAACCTAATGAGAAAAACAAATTATGTGCCAAACTGAATGCAGCCAAAAATGACGAGGCAAACAAGACTACCACTTCAACATCAGCAATTGTTAGTCCGACAAGTACCAGTACAGTTTCTTTAGTTGAATCTAGTAGAAGCAGCATTTCCATCAACAAGTCAACCATTGCTACAGATTTGGCTGGTAAAACTGGCCAAACTGGAAACTCTTCAGTAGAAATATTAATTTCCTCATTATGTATACTGGCTATTTTGTTTTTGGCTATTATTCTCATCTATAAGAAATGGTCTGCCAGGAAAACAAGTTCTACAAACAGGAATGAGGAGTATGTTGAAGTAGAGACAGAAAACCCTGAAGTGCAACAGAGCAATAATACGAATATGAACATCAATGTTGATGACATTCCTCAAGGAAACCCTCAGGGACAAGAGATGGTCAACTTTGACATGTCGAACATTGAGAATATTCCTGAAGAGTTGCTGATTACTGACATAAGGAACTTGTTCTGGATAAATAATGGGGACAACGAGGATGTGATAATCTTCCAGGTCCAAAACAAGCTTGATATCCCAGAGACTGCTCAAAAGAAGACATGGCGCAGCGTGTTTCTGGCCTTAAAGGTGCATCCAGATCATTTTAACAAGATATTAAGTAGCGGAGACACAACTTTTGCAGCTATCGATTACCTCGAAACACTGGGTCTCCAACAACCAAAACTGAGAACATTTGTGAGAGCACTTCTCGTGTGTGGAAGGAATGATCTAGCCAGAATTATATGCGACTGGCCATACAAGAACAACGAAGACACAAACTGTGAAACACAAGTTTAATAGTTATTATTGTTTTGTGACGTAGTTCACTCTCATCTAGTGAAGACCGGTCTGAACAAACACGTTTTGCACAAGAGCAAAAGAAGTGGTGGTACAGGTAGTAAAGTTCCTCATTTGTTAAAAGATGACTACTTGAAAAGAATTAGCTACTCCCGACCTCTTAGCCTTTTGATTCTAAGCATGCAGTTAGAGTTCCTGGACTCTTAAATTAATTAGATTTGCTAGATCCTTCTATTTGTAACGATGATTGGAAGTCTGTCAGAACAGTTGTACATACGTAAGTCTAAGCTTATACAGTAATAAATTGTAATTATCACAACATGTCTCAGTAAGATTATCACAGTTAAGCTATATTAAGTCAGGACTTTTTTCATAACCGTTCAATTACCTTTATCACTGCTAGACCTATGGTATTAATTTAATTTCATACAAGCTGTGCATAGGAAAAGCAGTGAAGCAGGTCAATTCATTGGAGAGTACGTTATAAGTTCACTACGGTGCTTCAGCAATAGGATCCATTAAGCTCATTTTTATTGTGGTGTACTCAATTTTAAAATTTAAAAGTGCATAATTATGATGAATACTTCAACGAGAAAACAAACTATTTATTATTTTAATGACTATTTAGCAATGAAGGCCTTGAAACATATCAGCTTTGTAGTCATACATTGCAATATGGCCATGCGCGCAGTCAACTCATTTGATACAGCAAAGTTCTTTTGAAGTTAAATTATTCTTTCTTTTGTCAAGTTCAGGTGATTCTCAAAGTTATCAATTATTATTGTACAATGTACAGCAAGATTCATGTTAACAATTACTTTATTTTGCGACAGTAAAAAAATATGGCGAATTTA

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
--	--	--	--	--

InterPro

InterPro term	Type	Description	Source
IPR001368	Domain	TNFR/NGFR cysteine-rich region	Interproscan
IPR047526	Family	Tumor necrosis factor receptor superfamily member 19/27/EDAR	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12120	TNFR-CYS DOMAIN-CONTAINING PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0038023	Molecular Function	signaling receptor activity	Interproscan
GO:0043123	Biological Process	positive regulation of canonical NF-kappaB signal transduction	Interproscan
GO:0046330	Biological Process	positive regulation of JNK cascade	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K04722	TNFRSF10A_B, TRAILR1_2, DR4_5, CD261_2; tumor necrosis factor receptor superfamily member 10A/B	-	CD molecules	ko04090	deepkoala