Gene detail

Detailed information of aech_s0007.g71.t2 in Acropora echinata

Genomic Location: sc0000007_pilon:1357651...1373281
NR annotation: XP_029212976.2, spermatogenesis-associated protein 20-like [Acropora millepora]
Species abbreviation AECHI · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

aech_s0007.g71.t2

ATGGCATCAGGTGGCTGTGAGAGTAATGGAGACAAACACAAACATACGAATCGCCTGGTGAATTCCATGTCTCCCTACTTGTTGCAACACAAGCATAACCCAGTTGATTGGTATCCCTGGGGAGATGAAGCATTTAAAAAGGCAAAGCAAGAAAACAAACCCATTTTTCTTTCAGTGGGTTACTCTACCTGTCACTGGTGTCATGTAATGGAGAGAGAATCTTTTGAAAGTGAAGAGATTGCACAAATCCTCAACGACAAATTTGTATCCGTAAAAGTTGATCGAGAGGAAAGACCTGATGTGGATAAAGTCTACATGACATACATACAGGCCATGACAGGCGGAGGTGGTTGGCCCATGAGTGTGTGGTTGACACCAGATTTAAAGCCTTTTGTTGGTGCCACTTACTTTCCTCCAGAGGACCAGGCTGGCAGACCGGGCTTCAGGACAATTCTAAACCATATTTCCAAACAGTGGGAAGAGAACAGAGACAAGTTGATGCAGCAGGCAAATATCATTATAAAGGCCATACAGCAACACACAGGAGAAATGCACGAGCCGAACGAGACAGGGGACATGCCAAGTGCAGAATGCATCAGCAAGCTTTTTAATGATATGAAAACAAGTTTTGATGAGGAATATGGTGGATATGGTGGAGCTCCAAAGTTCCCTCAAGCATCCAATTTTAACTTTCTATTGAGGTTCTCTTCCTTCAAATCTGACTCTGAGGAAGGAAAGGAAGCAAGTAATATGGTGCTCAAGACTCTGGAGTTTATGGAGAAAGGCGGCATCCATGATCATGTTGGACAGGGATTTCACAGGTATTCAACTGATCGCTTTTGGCATGTCCCTCATTTTGAGAAGATGTTGTATGATCAGGCACAGTTGGCAGTCCTGTATGCAGATGGCTATCAGGCGAGCAAGAAAGAGAACCTAGCTGAAACTACAAGAGACATCTTATTGTACGTGATGCGGGATTTGAGCCACAAGCTTGGTGGATTTTATTCTGCGGAAGATGCGGATTCCTTGCCAAACAAAACTGACTCCCATAAGAAAGAAGGAGCGTTTTGCGTATGGGAGGAGCAGGAGATTAAAAAACTTCTTCAGGATGAACGAGTCACAAATAAAAGCGGCGACAGTGTTTCCGCGTCATACTTGTTCGTGAAGCACTACGGGGTGGAGAGCGAAGGAAATGTCAAACCCCATCAGGATCCACACAAAGAACTTCGGGGCAAGAATGTTCTGATTGTTCGAGGGAGCTTACAGGAGACAGCAAGAGCCGCTGGCGTTGATGAATCGACAGTGGCAGAACAACTGGCGCGAGCACGAGAAATCCTGTTTGAAGAACGACAAAAAAGACCGCCGCCACATCTTGACACCAAAATGATCACAGCTTGGAACGGTCTCATGATCTCGGGTCTTGCTCGCGCTGCTCAAGTCCTTAGCGAAGAGATTTATGAGAAGAGAGCGAGAAAAGCAGCTGAGTTTGTGAAGAAATATCTGTTTGATGCGAAATCTGGACAGCTTCTACGTAGCTGTTACCGCGGTGATGATGGAGAAGTGATGCAGATAGAAACACCGATTTATGGGTTCGCAGACGACTACGTGTTTATGATTCGTGGGTTGCTAGATCTGTATGAAGCATCTTTGGATGATCAATGGTTACAATGGGCTGTTGAGCTGCAAGCTAAGCTGGATGAAACACTGTGGGACAGTGAAGGAGCCGGTTACTTTATGGGTACACCAGGTGATCCCTCCATTCTGGTCAGGATGAAAGAAGCTCAAGATGGCGCGGAGCCCAGCGCCAATTCTTCGTCGGTTGGTAACTTGATTCGGCTCCATAGTTTTACTGATGATAAGAAATATGTGGAGAGAGCGGAGCAGATTATCAAGGCATCTGTCACGTTACTATCGAAGCTTCCTCTTGCTTTACCTGAATTAGTGTCCAACTACATGTTGTACCTCCAACCTAAGAGACAGATAATTATCGCTGGGGACAGAGAATCGGAAGATACGAAACAGCTTCTAAAATGCGTTCATTCGCATTTCATCCCGAACAAAGTCCTCATGCTGTGCGATGGGAAACCAGATAGCTTTCTTGCCTCCAAGCAAACAATCTTCGAAACATTGGCGAGGAAAGGCGGTAAAGCTACTGCTTACGTCTGTCAAAATTACACATGCTCACTTCCGGTGAATACTGTCGAGGCTCTGGAAAGGCTTTTATCGAGGTAG

Transcript

aech_s0007.g71.t2

CAGACAACCTTGATGTTTTCCTCGACCATTTCCCCTCGAATTTTTTCCGGGTTCGCTTTCAATGGAAACAGAATAAATACGAGAAAATTAATCACCCCCTTGGTATTTTGTTCAACAAGGTACTCGTTGCTTTTCCGTCGCACGATGGCATCAGGTGGCTGTGAGAGTAATGGAGACAAACACAAACATACGAATCGCCTGGTGAATTCCATGTCTCCCTACTTGTTGCAACACAAGCATAACCCAGTTGATTGGTATCCCTGGGGAGATGAAGCATTTAAAAAGGCAAAGCAAGAAAACAAACCCATTTTTCTTTCAGTGGGTTACTCTACCTGTCACTGGTGTCATGTAATGGAGAGAGAATCTTTTGAAAGTGAAGAGATTGCACAAATCCTCAACGACAAATTTGTATCCGTAAAAGTTGATCGAGAGGAAAGACCTGATGTGGATAAAGTCTACATGACATACATACAGGCCATGACAGGCGGAGGTGGTTGGCCCATGAGTGTGTGGTTGACACCAGATTTAAAGCCTTTTGTTGGTGCCACTTACTTTCCTCCAGAGGACCAGGCTGGCAGACCGGGCTTCAGGACAATTCTAAACCATATTTCCAAACAGTGGGAAGAGAACAGAGACAAGTTGATGCAGCAGGCAAATATCATTATAAAGGCCATACAGCAACACACAGGAGAAATGCACGAGCCGAACGAGACAGGGGACATGCCAAGTGCAGAATGCATCAGCAAGCTTTTTAATGATATGAAAACAAGTTTTGATGAGGAATATGGTGGATATGGTGGAGCTCCAAAGTTCCCTCAAGCATCCAATTTTAACTTTCTATTGAGGTTCTCTTCCTTCAAATCTGACTCTGAGGAAGGAAAGGAAGCAAGTAATATGGTGCTCAAGACTCTGGAGTTTATGGAGAAAGGCGGCATCCATGATCATGTTGGACAGGGATTTCACAGGTATTCAACTGATCGCTTTTGGCATGTCCCTCATTTTGAGAAGATGTTGTATGATCAGGCACAGTTGGCAGTCCTGTATGCAGATGGCTATCAGGCGAGCAAGAAAGAGAACCTAGCTGAAACTACAAGAGACATCTTATTGTACGTGATGCGGGATTTGAGCCACAAGCTTGGTGGATTTTATTCTGCGGAAGATGCGGATTCCTTGCCAAACAAAACTGACTCCCATAAGAAAGAAGGAGCGTTTTGCGTATGGGAGGAGCAGGAGATTAAAAAACTTCTTCAGGATGAACGAGTCACAAATAAAAGCGGCGACAGTGTTTCCGCGTCATACTTGTTCGTGAAGCACTACGGGGTGGAGAGCGAAGGAAATGTCAAACCCCATCAGGATCCACACAAAGAACTTCGGGGCAAGAATGTTCTGATTGTTCGAGGGAGCTTACAGGAGACAGCAAGAGCCGCTGGCGTTGATGAATCGACAGTGGCAGAACAACTGGCGCGAGCACGAGAAATCCTGTTTGAAGAACGACAAAAAAGACCGCCGCCACATCTTGACACCAAAATGATCACAGCTTGGAACGGTCTCATGATCTCGGGTCTTGCTCGCGCTGCTCAAGTCCTTAGCGAAGAGATTTATGAGAAGAGAGCGAGAAAAGCAGCTGAGTTTGTGAAGAAATATCTGTTTGATGCGAAATCTGGACAGCTTCTACGTAGCTGTTACCGCGGTGATGATGGAGAAGTGATGCAGATAGAAACACCGATTTATGGGTTCGCAGACGACTACGTGTTTATGATTCGTGGGTTGCTAGATCTGTATGAAGCATCTTTGGATGATCAATGGTTACAATGGGCTGTTGAGCTGCAAGCTAAGCTGGATGAAACACTGTGGGACAGTGAAGGAGCCGGTTACTTTATGGGTACACCAGGTGATCCCTCCATTCTGGTCAGGATGAAAGAAGCTCAAGATGGCGCGGAGCCCAGCGCCAATTCTTCGTCGGTTGGTAACTTGATTCGGCTCCATAGTTTTACTGATGATAAGAAATATGTGGAGAGAGCGGAGCAGATTATCAAGGCATCTGTCACGTTACTATCGAAGCTTCCTCTTGCTTTACCTGAATTAGTGTCCAACTACATGTTGTACCTCCAACCTAAGAGACAGATAATTATCGCTGGGGACAGAGAATCGGAAGATACGAAACAGCTTCTAAAATGCGTTCATTCGCATTTCATCCCGAACAAAGTCCTCATGCTGTGCGATGGGAAACCAGATAGCTTTCTTGCCTCCAAGCAAACAATCTTCGAAACATTGGCGAGGAAAGGCGGTAAAGCTACTGCTTACGTCTGTCAAAATTACACATGCTCACTTCCGGTGAATACTGTCGAGGCTCTGGAAAGGCTTTTATCGAGGTAGCTATGCTGTGTGGTTAGTACTAGAAAACCGGTTTAGCGGGAGTCGATACAGCAGGAACTGAGTTTTTTATACATGATATCGGACTATGCAACCACGCTACTTGTAATCACGCTTGCCGGGGCACGTGGATAATCAGAATAAAAGAGCAACTGTTGAGGGAAGTCACGGTGTGAATCAAGCGATACTTCGGGTTGCACTCTGTCTCAAAAGCTTTGCGTCTGTGGTACTTTTGGCTTAGTTATAGTTGAAGTGAATATACCAACATAAAAAGTAATAAACTGTCTCATTGCCAGGGATTTGGATTGATTTTAACTGGTAGACGCTTCTTGATATACGTAGTGTAGATGCGGTGTTCTGACTGTCTTTCTCAAAATCATAACTCGACTTATTCACATTCTCGTCTAAGACAGCTTCATTTACAGAGGAGGTCTCCGGCAATTAGCAATCCTAGGATGACAGGTTCTTGAAAATTAGGATTCCTACTTTTTGGAAACGCGGAAATAAAGAAACTTTTGGGCC

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q8TB22	Spermatogenesis-associated protein 20 OS=Homo sapiens OX=9606 GN=SPATA20 PE=1 SV=3
Q6T393	Spermatogenesis-associated protein 20 OS=Rattus norvegicus OX=10116 GN=Spata20 PE=1 SV=1
Q80YT5	Spermatogenesis-associated protein 20 OS=Mus musculus OX=10090 GN=Spata20 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0006117 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF03190 all species →	Thioredox_DsbH	Protein of unknown function, DUF255	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR004879 all species →	Domain	Domain of unknown function DUF255	Interproscan
IPR024705 all species →	Family	Spermatogenesis-associated protein 20	Interproscan
IPR036249 all species →	Homologous_superfamily	Thioredoxin-like superfamily	Interproscan
IPR008928 all species →	Homologous_superfamily	Six-hairpin glycosidase superfamily	Interproscan
IPR012341 all species →	Homologous_superfamily	Six-hairpin glycosidase-like superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR42899 all species →	SPERMATOGENESIS-ASSOCIATED PROTEIN 20	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005975 all species →	Biological Process	carbohydrate metabolic process	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K06888	K06888; uncharacterized protein	-	Function unknown	-	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.