Gene detail

Detailed information of aech_s0009.g251.t1 in Acropora echinata

Genomic Location: sc0000009_pilon:3701538...3706552
NR annotation: XP_029197475.2, sorting nexin-10B-like isoform X1 [Acropora millepora]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

aech_s0009.g251.t1

CTTGATTGGTTCTTGGAAAACACGGTTGTTTCAGTTTCACCTCACGTTTTGAGCTAATGAATGCATTGTAAGATTACTTCCTAGGGTCTAGTTGTTCTCTCAGCGAGGAAGTTGCCAAAAGACCGTGCATTTGCCGATGTGTTTTTGAGAAATGACTCCAGTCGAAGGATCAGCGGGAGAAAGAAGATCTCGTGAATCGTTGGATGACAATGCTCCTACTCGCCGAGGACCAAGGGATCGTAGGCAGCGATCCACAAAGGTTGTGAAGTTGGACGTAAAGCAGCCTAAGATACACTGTTGTAGAGGCCGTAAGTTTGTCGACTATGAAATAACGATCGAGACAAACGATAAAGCTTTTTACAAGAAATATTCCACTGTCAGGAGAAGATACTCAGACTTCTGTTGGCTCAGAGCAAAGTTGTCGAGCAGTGAAATCAATGGATTCGGAAGCGATGAACGAGGTATACCACAGCTCCCACCTAAATGTTTTTTCAGTAGATTCAACAAGGAAGTTGTTGATTCACGGATGCAAGGACTTAAGCAATTCTTAATGGGAATTGTAAAGTTCAACTATTTCCTATCATTTGCTGGACTCCATTTATTCTTACAAACTCAGCTTCCAATTAAAGAAATAGACGGATTTCTTGAAGGCAAGTATGGGGAGAGTGTGTCTGTCGAGGAGTTGATTCAAGAACGCGTGCTTGAAAATGAAGAAGACAAAGCCCATATCTCATGTTCAAATGAAAATTGTACTGTGATGACATCTCCAAACTGGAACATTTCATCCTCACCTGAAGATGACATAGGCTCTATTAAATCTTCATCGGGAAGCTACAATAGTGTAGAAAGTTTACCAGGACCTCTCTCTAGCTCTTGGGAAAGCTGCTCTTTCTACAGTGCCTACAGATGATACTTATCTGTGAATTAGTCATAGTTTATTTTTGGGCAAGATAAAGAATTAAAAAATAGCAACGAGCAATGCTCAGAGGGAATTACCTTATCGTTGGAGATCTTAAAAAAAAAAATTGGCATCTGACAATTTCAACTTTCGTTTCCTTCATTCAATGTATTGGTTGTTAGAGCAGTGTACCACACATCGATGTAGTCTCTGCTGCTGCAAATAGTTGTTCTGGAAAGTGTAACAGCTAAAATTTTGTGGCCTGGCTTCTCTAACAGCCTTCTACTTCTATATTTTTTTCCTtattggtaatcaactgaatgataataatgataaagataattataTTTGttattattattattattactattattattatAATTTTAGACTAGCAGTCCCTCCTCTGCCACAACATCTGTTGAATGCAGTGTGAAAATAAAAATAAGTGCAAAGAAAAAGTGTCAATGCAAAATCTGGACACATGGGGATTTCCTGCTGCAATTTTTTTGTCTTAACACTCAACAAACTCGGTGGTGAAATAGGGACTAATATTAAATAGGCTTAGTTCACACAACATCATAATCATAAATATATTGTAGTTGAGGTCATAACAAACAATAAGTGTGAATTGCTCGCAATATTGTAATCATAGTCAAGATTGAAAACTTTTTCATTTTGATATGATTGACTGTTGCATCGTGCAATATGCGTGAACTGTGAATCATTATTATTGTAAGAATTATCGTGTTTCATTAATTTGATCTGCAGTTGTACTCAGTCAAACAAAATTGTGTCCAAAATGTTGAGCGTTCACATAATTCTGCTATCTGGAGCACTTGTAGGCAATAGTAAGCTCGCTGCTATTCATGTGCACCTTTTCTTTCTTACGAAGATGATTATGATGTCATGTGAACAAGGTCTAAGTGTGGAGTAGTCATCCAATAATGCTAACCAACTTCTAGCAGACTGTGCACCAATGCAATTTGGTGCACAGTCTGCTAGAAGGTCTCTGCCAGCTGTGCCACTCAAGACCAAATAGTTATATATTAGAATATATATTTGAATACTCAATAGTATGTTCATAAATCTCAGCTAATGTATTCAAAGTATTATGATGACAATACTCTGTACCATAAATTATT

Protein

Uniprot

Uniprot term	Description
A8WG21	Sorting nexin-10B OS=Danio rerio OX=7955 GN=snx10b PE=2 SV=1
Q08DD7	Sorting nexin-11 OS=Bos taurus OX=9913 GN=SNX11 PE=2 SV=1
F1Q506	Sorting nexin-10A OS=Danio rerio OX=7955 GN=snx10a PE=1 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00787	PX	PX domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036871	Homologous_superfamily	PX domain superfamily	Interproscan
IPR001683	Domain	Phox homology	Interproscan
IPR043544	Family	Sorting nexin-10/11	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46209	PX DOMAIN-CONTAINING PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0035091	Molecular Function	phosphatidylinositol binding	Interproscan
GO:0005768	Cellular Component	endosome	Interproscan
GO:0006886	Biological Process	intracellular protein transport	Interproscan
GO:0016050	Biological Process	vesicle organization	Interproscan
GO:1901981	Molecular Function	phosphatidylinositol phosphate binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K17924	SNX10_11; sorting nexin-10/11	-	Domain-containing proteins not elsewhere classified	ko04990	deepkoala