Gene detail

Detailed information of aech_s0011.g27.t1 in Acropora echinata

Genomic Location: sc0000011_pilon:205811...213465
NR annotation: XP_029194303.1, LIM/homeobox protein Lhx1-like [Acropora millepora]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

aech_s0011.g27.t1

CAACCTTGGAAGTAAAGACCCGACCAGCATTCGGATTGTGAAGCGCATCAAGCAAGGTTGGACAGAATAGTTTTTTTTCTAGCTCGATTAGGGCTACCAAACACAAATTTATGCTATGCAGTGATTAGAACATTCCACCTTGATTGAAAAAGAGACTGAGAAGAGAGACTATTCTACGATAATTACACTTTGCAGAAATAAATGAGAGGAAATTCCTTCAAAACACACCAAAAGCCGAATAACCAGTTGTCAAAGGAAAAAAGAAATATAGGTCTAAGAAAGGCTGGATAAAAACAGGCGGAGTCAAAAGATATCAAAAGAGGAGCGCGTAAATGTGTTGTCTTTCAACAAGCTAATTGACGTGTAGCATGGCGAACTGAGTGCTTTCTGAGTCGCGGGCTTTCATCCGTCACTTTGCATTCCGTGCCTTAAACTATATGCAAATTTGGTCCGCCGAATAAAATAGTGCGGCAGTGTTAAGAAAATCCGCAAACCCTCCCTTTAAATTCGCTTTACTGTCCCGTTTAGCAGCTGCTAAGTCAAACGTGCCACCCACCGTGCACGTAGAAGAGTTACTCGCATAAATTTCACGCGTGGAACCCTGTACTTTACATAAACGTACATACATCCATAGCGGACGGAGAAACGAGTAAGCAAGCGAGCTGCCACAATTATCTGGATGAAGGCGCAGATTTGCAGTATGGTTCAACAATGCGCAGGATGCGAGTTGCCCATTTCGGACAAATTCCTGCTCAAGGTTTTGGATCGACTGTGGCACATCAAATGTGTACACTGCCATGACTGCAAAAGCGCACTCACGAACAAGTGTTTTTCCCGAGAAGGAAAGCTGTTTTGTAAGAACGACTTTTACAGGCGATATGGAACCAAATGTGCTGGCTGTTGTTTAGGGATCTCGCCAAACGACATGGTAAGGCGAGCCAAACACTTGGTTTTTCACGTCAAATGTTTCAATTGTTCCACCTGCAACCGGCAAATCTTGACTGGCGATGAACTGTATTACGTGGGAGATAGTAAATTCGTTTGTAAGGAAGACTACTATCAATCACGCCTGCCAGCTAAGTCCGACTCTGATTCCGAAGAGAAGGATCTCAGTTATGGTTTGGACGAAGATTTTGACATAGCGCTTGGAACAAAACGAAGGGGTCCGCGTACAACGATAAAAGCCAAGCAACTTGAGGCTCTCAAAGCTACATTCGCAGCGACACCGAAACCATCTAGAAATATCCGTGAAAAATTAGCTCAAGAAACTGGATTAAACATGCGAGTTATACAAGTTTGGTTTCAGAATCGAAGATCAAAAGAGAGAAGACTTAAACAGCAAGGAGTTTCTCAACCAAACGGCGCCGCAAACCGCGCTGTGAGGTCAGGCAGACGATCAAGAAGAGCGAGAGGTGAAAACCTTGGAAACGAAACAGCACCAAACAGCGAACAGTCAATCAACACATCGCATATAAATTACTCAGCTTCTCAAAACGCACACTTCCCCACGGCAACATTTGATGATTTCTACATGAAGGCTGATCCTAGTTTACTAGCTGATGTGCCAACTACTTTAGACAACTCTCAAATGCTCCATAACACGGGATTTAACAACCAGGCAATCGGCATGCCACCGAATTCTGTTAACGATGGAAGCCCTGGAATGCAAATTAGCAACTGTGCAATGGGGCAAAATACGAACTGCGTCATCTACGAAACCACAGCAGCAACCGCGGGGAGACCAGTACACAACACTATTCCATCTGCTGCTGAGGTCTGGTGAAACTGAAGTGGGAAACTTAAACTGCGCCTTAAAATTGCAGTTGTCTATATGCAATCAGGCGGACAAGGATCATGGAAAAAATGTATACATTATTTATTGCCTACAAAGGACGCGAATTCTCTTGTCAAAAAGAATTCACCTGAAAATGGTGTTAATCCACATTTGAGCCAAGATGTAAGAATAATGCGGGAAGACAACAATCTTGTCCAGTAAAAAGCACGCACATATCTGACTGAACTTGGACCCCAGGAAAAGAAAAATCTTTTTATCGTCGAGCTGAATCAATGGAGCGCCGCTCGGGAATACGACTAGTCATTAGAAAGATTAAGCAAATAATGCCCCCAGGCTATGCATTAGCGAAGGAGTTTAGTTGAAATCAGCTTGATGAACAGAGAAGGCTATGTGAAATAAAAATTATGCAACAGATCAAATACATTTTAATATAAAGCGCCCAGAGAAGAAAGTAAAATGTAACTTATATGATAGTTCGCAGGTAAACGGACATCTGTATGTATGAATTTGTAAATGTTTTAAAAGAATATTTTATAACACTCTGGCGTGTGAAACGCAAGAGCTGCCTAGACAAGAGAAAAAAATCCCACAAGAAATAAAAAGAGAGATTTTATTAACGCTTGTAAAACACTTACAGGGAAAAAGAATAGAAAGAGTGTGCTGATCCTGGAGATTTCAGATTTCAATTCAAAAAATAAAATAATATCCTCACAACAGGTGTATAACATGTGTGTTTACTCGCAAGTAAAGGATAACTGTTTTACACTTTGCCAAGCTTGTCTCATGGAGAAATTTGACAAAAATTGCATTTATGTGCTTGTCAGAGCTCAAACGCTCATTATCACCTGCTTGTATATCTTTGAAATCATTTGAACCTATCAAGGCAAGCTATCTTTGGTTCACAGACAGAGAGTCAGCCTTGGTAATGCAGTTCAGATTCCCATTGTTTTCTACTTCTTGGCACTGATCAGTTAAGAAATGAATTTCTATGATAGTTCTGTGTTAAAAGGGTATGGTGAAAAGGCGCCTCAGGAGCAAGAGGCTGGTTTGAGTGTTCTCCTGCACCATTGCTTACAAAAACAAGGGAGCCAAAACAAGCCCCATTGACGGAACCTCTTTGAAAAGAGCTTGGCAGGCGGTCGACAGAGAACGCAAAACACATGGACCTTACGAAAAGACCACCTAATGTTTTGACTAACAGACTCCGGTTTCTTTCTTTAAAAAGATCAAACTAGCTCATGTTTTATGTACGAGCCACAAGTGAGGCTTTTTAAACCAAGACTTTCGAGTTGGCCGAGCCAGCAGGGGGCTGATTACTTCTTGTCCTCAGCACAGCCATGTTTTCGACTGCTTTTGTTTCAAGGCGATTTAATCCCGCCTTACAGCAAACGTGTCCCAAAAGCTACGCGGTGTGTTGAACGCTATTTTCTGTTCGTTACGCACGAACTTTTCACGAGCCATCTTACTTCCAAATAAAACTGAAATCAGTTAAAAGATGTGGTTTCTGCCCTTGTGGGTCAACAGGAAATCTAATAAATCGGTTTTAATAGA

Protein

Uniprot

Gene family

Uniprot term	Description
P29674	LIM/homeobox protein Lhx1 OS=Xenopus laevis OX=8355 GN=lhx1 PE=1 SV=1
Q90476	LIM/homeobox protein Lhx1 OS=Danio rerio OX=7955 GN=lhx1a PE=2 SV=1
P53411	LIM/homeobox protein Lhx1 OS=Gallus gallus OX=9031 GN=LHX1 PE=2 SV=1

Gene family	Subfamily
Transcription Factors Family	Homeobox

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00046	Homeodomain	Homeodomain	Domain	Interproscan
PF00412	LIM	LIM domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001781	Domain	Zinc finger, LIM-type	Interproscan
IPR001356	Domain	Homeobox domain	Interproscan
IPR017970	Conserved_site	Homeobox, conserved site	Interproscan
IPR050453	Family	LIM/homeobox transcription factors	Interproscan
IPR049618	Domain	Lhx1/5, LIM domain 1	Interproscan
IPR049619	Domain	Lhx1/5, LIM domain 2	Interproscan
IPR009057	Homologous_superfamily	Homeobox-like domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24208	LIM/HOMEOBOX PROTEIN LHX	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003677	Molecular Function	DNA binding	Interproscan
GO:0000981	Molecular Function	DNA-binding transcription factor activity, RNA polymerase II-specific	Interproscan
GO:0006355	Biological Process	regulation of DNA-templated transcription	Interproscan
GO:0000977	Molecular Function	RNA polymerase II transcription regulatory region sequence-specific DNA binding	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0006357	Biological Process	regulation of transcription by RNA polymerase II	Interproscan
GO:0030182	Biological Process	neuron differentiation	Interproscan
GO:0008270	Molecular Function	zinc ion binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K09372	LHX1; LIM homeobox protein 1	-	Transcription factors	ko03000	deepkoala