Gene detail

Detailed information of aech_s0011.g358.t1 in Acropora echinata

Genomic Location: sc0000011_pilon:3842354...3852554
NR annotation: XP_029192266.2, uncharacterized protein LOC114958609 isoform X2 [Acropora millepora]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

aech_s0011.g358.t1

ATGTTCTTCCTTTTGACAGGATGTTGTATTTAAAGCTGAAAATTTGTGCAATGGGAAGGCTGATAACAACGCGCGTGCATGGAAAATAGCGAAGGAAGATCTGATTACTGGGCGAATGGAGGGTGAATTTCAACTGGAAAAAGCTTCTTATATAAGTCACATCGATATAGGTAACTGTGGCTCTGCTTTCATTGAAATCTTGGTTGGTAATTCAATGTGGTCCCAGGACAAGCCATATGTTACATTGCTACCGTCTGCTATGCTGATGTCTCCAACTGAATGTAAACACTGGACCAAGACACACACTGTGCGAATGTTCAACCAGAGTGCTTTCTCCAAGAAAGCCGTGGGAAGTCAGTGGGACAGAGTTAGAGTTATATGTCTCCAGCCTTTTAGAAAAGACAAGCAGTTTGGGTTATCTTTCATGAGGTTGGGATCTGTTCCTGATGAGTCTAAGGCGTGCTCTTCTGATCGGCTGACACCTGCTAAAGTGGTAGTACCCACATCAAGAGAATCCATGGACAATCAAACTCATGATGATGGTGTGATGAGGCTAAAGAAGGCTTCAGGATTAATGGGGTGTCTTAGGGATATAGAAAAAGGGAGCAGTGATGTTCCTCTTAACAGAGCAGAAAGAATACTTCATGCTGCTCTTGACAGCAGATCCCCAGGTACCCCTAGGAATAGAAACAAGAGGAAGTTGTCCCAATCCTCTCCAGAGATTTCACGTAATCCTGAAAGTCCTCTCCTACATGAGAGCAACTTGTCACTTGATGAAGAGCCAAGTGATAAAAGGAAGAAAGAAAATAGAAGATGGAGTCTTTCTGGCAATATTGAAGATGAAGTTGCTTTATTTCTTGAGGAAATTGACTTTGCCAACATGGATCTTCACAGTATTACTTTCAAAGATTTGAGGAATCAGATGGAAGAGCAAAGAGGTTGTTCTCTAACTAGGCTAGAAAAGAAAGTGTTTCTTCAGTTAGCAAAGGCAGCCATTGAAAAGTCAGTACCAACAGAGTCAGATACAGAGGATGTTTCTGATGATTGCATAAGTACAGCTGACATCACTACAGTGGTCGAAAAGTCAGACAACATACAAGCAGATGAATCAAAATTGGACACAAGAAGGTCTGTTGGTAAACATTCCTGTTCATCACAAAGAGAAAGTATTCAAACCCGAACACCTTCTTTGTCACATCCTTCCACTTCGACTGCCTCACTAACTGAAACAAAAAAACAGAAAACTGAGAATAATGATGTAGTCATTCCAGTTAGTGATGAACGTGACAAAAATCTCCCATCTTGTTTATCAACGGTTATTGTACATGCGGATCATGGTGAAGATGAGTTACCATCTATGCTGTACCATTCCAAAGATAACAAACCAGCACAATATGATCTCTTTGGGTATCCCAAAGAAGGCCCTGAATCCTCCATGAAGAACAAGTCCCTTAGCTGCTTAGTAGAATGCCCACTTTGCAATAGCTTTTTCTCAGCAGCGGAGGTAGAATTCCATGCTGCCTTTTGCACTGGTGAGTCTCAGCCACCAGTTACAACACCAACTACACCTGAAAAAGAGGTTGCACTCATGCAGTGCCCAATTTGTTCCAACCTATTCCCAATCAGTGACATTGAGGAACATGCTGACAGATGTGTCCAGACTACCATAATGCACACAGAAATGAAAAGAGGTCCATTAACAATTTGATGACCTTAGATGAACACTGCAATAAACATCTGTGTTCCAGCATTTTTGGTTTTTGACCGCTTTTGACAATGTTATAATAGAATATTTTAAAGAATATTAATTTTTAAGAGAGGTTGACATTATAATAGAAATACAGTTTCTGATACTTTTTATCCACATCAATGTTCATTAAGATTGGTTGATTTACAAGAATGTATCAAAGTTGTATTTTATAAACAACATTTATTGTAAGTGAAGAGAACTACCGTAACAAGGTACTTGTAAAGACGCTGCTATTGTCATCTTACAGTAGTGAAAACATCCTACAGAACAAGCAATGTATAATTAATCAACATGACCTTGAACGAGTGGCATACTGTTATACTTCACAAAGATGCCACAGATCAATGTTCCCACAACACTAGTTATGAATATTCTTTTCAACAGGTCTCTACCTCTTATATTAAACAGAAGGTAGTTTTATTTTAGGCCTCTGTTGCAGTTCAGTGTGAGGCATGTTCATCTGCAAATGAGCAGAGAGTGTATAAAACTATTATTTTATCTTTCAATCTTTGAAATAATTGTATTTTAAGTTTGTTTAAATCCTGGCAATTCTGAGACTGGGTATACTTAGTCAAGGTTTGAGTGCCACATTGAAAAATTATAATAGTTAATAACATTAATTTTGTGGTTACAATGTATTTAACTCTGACACATTTCTGAAGAGAAAACAAAATTCTTGTCAGAAATCTAATTCCTGCCGGAAAGATTGAGATATGTCTGCCTCATTATCTGATTCCCAAAAATTTGCAGGTAAAAAACTATCCATAGGAACAAGTTCATTAAAACCAATAGGCATTATCCTGCAATTTGTTAGAAGCTGAGCCATATCATCCCAGCATGCTATGAGTCCATCTGGATCCCTCATCTTTGGTTGTACATCCCCTGTTGTAGCTAATGTCTCAGTATCATTAAGTCTGGCTCTAGACTTGGTGGGCTCTGTTGAAACAAAGGTGTTTACTAGTCACTGAATTGCCATCATAGCTTGCAAACAATACTAAAACAAAAATGCAGTGCATACCTTTCTCTGTAGATGCAGGTAACGTAAACAAAGCTAGTGGTGTTCCTTTGTAATGGACCTGTAATTTTACATGAAAGCAGAAAGTCCTCTGAGTAATAGTTGGGTAATGAATGATTTCATGATAT

Protein

Gene family

Gene family	Subfamily
Ubiquitin Family	UBD\|ZnF\|UBZ

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
--	--	--	--	--

InterPro

InterPro term	Type	Description	Source
IPR038868	Family	BRCA1-A complex subunit RAP80	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR15932	UBIQUITIN INTERACTION MOTIF-CONTAINING PROTEIN 1	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0006302	Biological Process	double-strand break repair	Interproscan
GO:0042393	Molecular Function	histone binding	Interproscan
GO:0045739	Biological Process	positive regulation of DNA repair	Interproscan
GO:0070530	Molecular Function	K63-linked polyubiquitin modification-dependent protein binding	Interproscan
GO:0070531	Cellular Component	BRCA1-A complex	Interproscan