Gene detail

Detailed information of aech_s0011.g398.t1 in Acropora echinata

Genomic Location: sc0000011_pilon:4347286...4368606
NR annotation: XP_029192714.2, EF-hand calcium-binding domain-containing protein 5-like [Acropora millepora]
Species Acropora echinata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

aech_s0011.g398.t1

ATGGCTGCTGCAGCGGCTTTCACAAAAGAGCCTATTAAAGCCACTGAATTTGAATTTGAAGTTGTAGACCTTGGTCAAGACCAAGATCTTGAAGATGGTGATGTTATAAGGGGCGAGAGCATATCTCCTGAACAGTTGGGCAGAGACAGATCCAGAAGCTTATCGATTTCTGAGGTCATGTATCATCAGTTAAATGGCACAGATAGAATGGCGTCACCAGTGGTAAGAGCTTTTACAAGAAGTGCTGTTAACAGATGGCGCGGAAATGTGGAAAAGAAAATCACTAAGAGGTTAATGGAAGTGAAGGCGGAGAGAAAGAAACGCGATGCTGAGTCGAAAGAACTTGTACGCCTTGTTGCTAGGACGGTACCTTTTGACGTTTTAGCCAAAGACTGGCTCAATGATAATGAGATCACCTCAGAAGTGAGAATCTATTTGTTGGAGAATCTGTTGCCGACTCTAATTTTAGGAGTTGAAAAACTTCTAAGTGAAGTTGAAAAAAGGGACTTGGCCTTTTCAGAGGGGTTCTGTCCAACTTTCAATCCTATAGATTTTTTGGCTCAGTTTCTTATGAGGAACAATCCAAGGTTTAGTAATTTTGCTGAGGCGTCCCCTTATGCTAAAGGAATCCGGAAAGTTGTAGAAGATCTTAAGAAGGAGGTTTTTTCATTGGAAGATAACAAATTGGCCAAGCTTAAGGCTGAGGCTAagaagagaagagaagcaagagaaaaggaagaACATAAAAAAAACTTGGAGAACCGGCGTCGTTCTATTGCCATGGAGGAACAGTTCCCTGAATGGACAGCTGATTGGAATGGAATTCTCCCTTTGTCGGTTGTTCAAAATGTGTTAAGATCGTTTCAAGAGGAAGTTCATGGAAATCTCCCAGAAGAAATCAGGAAAGGAGCTGCCTTTATAATACCTCTTGAGCCAACAGACACTTCAGGAAAAATGATCAATATGAAGGAATTTAAAGAATATCTTCGACCTTATGCTGGTAACCTGTCAAAGGAAGCATTCAATGTATTTGTGGAGCATTTGTCTCGTTGTGCTGCACACTATCGCACCGCCACTGTCAGGGAAGCAATGAGACTTACTCTTCGAAATCTATTCTTGAGCTGTGATATGAAAAATGCTGGTTTGTTGGACAGGAAGCGAATTTTGGACATTCTCAGTTCATTTTATGACAATGCTGTTGAAACCATAAGGAATATTTTGCAAAACCCAAGAAAATCTGGAGAGGAAATTGTTCAAGATGATGCAAACAACAGCAATGAAGAGGACAGGAAAGAGGAAATAAAGAAGCAGCTAATTGATGATGAAGAAGAAGACAAAAAATTATTGGATTCCATACCAGATGAAATTGATGATGACATGGAGCAGGAGGACACAGAAACATCAGCCAGTACGCTACCCAGACCTAAATCAGGAACGGAAGGCTCGGCATTTGATGAGAATTCACTTAATCAACCACAATTTATACATCTGTTGGAGAAGTTTATGGGGCATACTCCAGTCAAACATGTGTTTGATGATCTTGTGCGTTTTGTAAGAGCATCATACAGGGAAACTGATGATGAGAGAATTGCAAGGATGAACAAGGCCCGTATGGAAGCTCGTTCAGCTAAAAGGCGCCACCAAGTAGATGCTCTCTATGAGTTGTGGGATGTCAATACCTCGGGATACCTTGAACTGGATGAGATACAAGTTGTGTTGGGCAAATGGCGGACGGATGGAATTGAGAATTTTAAAGAAGCATTGCAAGTGTTTAGTGAGGTGAACAGTACCCTTGACAAACGTTCTTTCCGCCAGTGCATTGATACCATTGTCAAATTATTAACTGATGAAGATGCATTTGATTCACTCATTGACTTTCTTACTAAGAGTGTCGAGCGGTCTTTCGAAGAGCGCAAGCGTGGTGATGCTCGAAAACGTTGGATGACAATGATCGATGCGGCTGCCCAGACTGGCGGTGCACAACTCGATCCAGTTTACCGCGCGGTGTTTCACGTACTCAATAAAGACGCTGAGGAGTATGGAAAAGGAAAGATCATTAGTGCATCTGTGAGCATGCTCGAAAACAACGATGACGCTGTTCAGCTATACCGCGGGGAAACAGTCTTACGTTATGTGGCTTGTACTGTGGATGACATTCCGCATGTGCTGGGTAAAATTCTTTACAGAGATATGAAGGCGATCAGCTGGACTGTCTTGGACTCGGGAAAGCCGATTCACGTTCCTAAAGTGGCCACTCACTCGGGGATTGTTTTGTGGAATCATTATCGAAAACAGGAGGGTGCAGAGGGCTCGTTCATCGCTCTTCCTCTCAAAGACCACGAGCGACGTGTTATCGGAATCCTTGGCATTGACACCTTAGCGGATCCTCATAAAGCAGTATTTATCACCCACGAGATCAGCTTCTTTCAGGGGGTGGCTAAGGCCCTCAGTCAAGCAATACAGTTTGTTGACATCCGGCGCAAGACACTCAGAGTGGCTGAGTCAGCAGTCTCTTGGATTCTTCGTCGCAGCCCTAATGTACAGAACGTGAATGTGTACCTTGTAGAGCCTGGATTGAAGCCCAGTGATGGCCTTGTTCTTCGTCGCATGATGACCTTGGGTCATAATGGAGTGAATCAACACTACACTCATCCACCCAGACTGGACAGAAAGGATAATCTCTTTAGGGACTACTTGTTCAAATGTGTGGAGAGTTCAGAAACCATTACTGCAGATGCTTATGGTGAGCGGCACATGGCCTTTCCTCTCAGGGATGGAGAAGGGAAAGCTGTTGCTGTGGTAGACATCAGCATTGGTGAACTAAAGGCACTTCCGCCACATGAGAACAAAGAAATACAGCGCATGCTCAGATTGCTTGCTATTGCGCATAGAGAAGTGGCTCGTGAAATCACTTCCGGCGCAGCAGAAAAGAACATCTGGCATACATACCAACTCCTTGCTGCACAAGAACCAAAAGAACTCGGTCGCTGTCTCATATTTGTGTCCTTTACCACTTTCCTCAAGATGGGTATTCTGGAAAGAATCGCTGAAATAGAAAATGAGATGGCGAGAACGCAGAAAAACAAGGCAACTGCGCATCATCTCGGATTGCTGAAAGCACGATTAGCCAAGTTACGAAGAGAATTGATCACACCGAAAGGCGGAGGGGGAGTTCAAGGAGAAGGTTTTGATGTTGCAAAGACTGGTGATGCTAGAATTGGTTTTGTGGGATTTCCATCTGTCGGGAAGTCAACTCTTCTGACCAACCTTGCAGGAGTGTACTCCGAAGTTGCATCATACGAGTTCACCACCCTCACTACAGTACCTGGTGTGATCAAATACAAAGGAGCGAAAATACAACTACTTGATTTGCCTGGAATCATTGAGGGTGCAAAAGATGGTAAAGGAAGAGGACGACAAGTTATTGCAGTTGCAAGAACCTGTAGTTTGATCTTTATTGTGCTGGATGTTCTCAAACCGCTGGGGCACAAACGTCTAATTGAGTATGAGCTGGAAGGTTTTGGAATACGGCTTAACAAGGATCCCCCAAATATATCATTTAAAAGGAAGGAAAAAGGTGGAATCAATCTGCAGACCACATGCAATCAATCAGAGCTGGACATAGATTCGGTGAGGTCAATCTTAAGTGAATATCGCATTGCTAATGCAGATATCACTCTGAGATATGATGCTACTGCAGATGACCTTATTGATGTCATTGAAGGCAACAGAGTTTACATTCCTTGTATTTACATCCTGAACAAAATTGATCAGATATCCATTGAAGAGTTAGATTTAGTCTACAAAATTCCTCATGCCGTACCCCTGTCAGCACATCACAAGTGGAACTTTGATGACTTACTGGAAAAGATATGGGAATACCTCAGTCTTATTAGAATATATACGAAACCAAAAGGTCAATTACCTGATTATGAGTCACCTGTTGTATTAAAAAATGGTCAGTCAACTGTGGAAGACTTCTGCAACTCACTTCACAAGGCCATCATGAAGGAATTTAAGCATGCATTGGTTTGGGGCTCATCAGTCAAATTCAGTCCACAGAAAGTTGGTAAAGATCATATATTGCATGATGAAGATGTTGTTCAAGTAGTGAAAAAGGTATAA

Transcript

aech_s0011.g398.t1

TAGTGATTGAGTTGCCATAGAAACAGCAGACTGTTCATTTTTACGCCATGTTTGAAGAAAACAACAATCTTCAGTCAAGGACTATGTTCGATTATTCCATCAGATGTTCTTGAATGTCTTCGGGAGTCCTAATTAGAATTTAATTGACCTTCGGTTGGAAAAATGGCTGCTGCAGCGGCTTTCACAAAAGAGCCTATTAAAGCCACTGAATTTGAATTTGAAGTTGTAGACCTTGGTCAAGACCAAGATCTTGAAGATGGTGATGTTATAAGGGGCGAGAGCATATCTCCTGAACAGTTGGGCAGAGACAGATCCAGAAGCTTATCGATTTCTGAGGTCATGTATCATCAGTTAAATGGCACAGATAGAATGGCGTCACCAGTGGTAAGAGCTTTTACAAGAAGTGCTGTTAACAGATGGCGCGGAAATGTGGAAAAGAAAATCACTAAGAGGTTAATGGAAGTGAAGGCGGAGAGAAAGAAACGCGATGCTGAGTCGAAAGAACTTGTACGCCTTGTTGCTAGGACGGTACCTTTTGACGTTTTAGCCAAAGACTGGCTCAATGATAATGAGATCACCTCAGAAGTGAGAATCTATTTGTTGGAGAATCTGTTGCCGACTCTAATTTTAGGAGTTGAAAAACTTCTAAGTGAAGTTGAAAAAAGGGACTTGGCCTTTTCAGAGGGGTTCTGTCCAACTTTCAATCCTATAGATTTTTTGGCTCAGTTTCTTATGAGGAACAATCCAAGGTTTAGTAATTTTGCTGAGGCGTCCCCTTATGCTAAAGGAATCCGGAAAGTTGTAGAAGATCTTAAGAAGGAGGTTTTTTCATTGGAAGATAACAAATTGGCCAAGCTTAAGGCTGAGGCTAagaagagaagagaagcaagagaaaaggaagaACATAAAAAAAACTTGGAGAACCGGCGTCGTTCTATTGCCATGGAGGAACAGTTCCCTGAATGGACAGCTGATTGGAATGGAATTCTCCCTTTGTCGGTTGTTCAAAATGTGTTAAGATCGTTTCAAGAGGAAGTTCATGGAAATCTCCCAGAAGAAATCAGGAAAGGAGCTGCCTTTATAATACCTCTTGAGCCAACAGACACTTCAGGAAAAATGATCAATATGAAGGAATTTAAAGAATATCTTCGACCTTATGCTGGTAACCTGTCAAAGGAAGCATTCAATGTATTTGTGGAGCATTTGTCTCGTTGTGCTGCACACTATCGCACCGCCACTGTCAGGGAAGCAATGAGACTTACTCTTCGAAATCTATTCTTGAGCTGTGATATGAAAAATGCTGGTTTGTTGGACAGGAAGCGAATTTTGGACATTCTCAGTTCATTTTATGACAATGCTGTTGAAACCATAAGGAATATTTTGCAAAACCCAAGAAAATCTGGAGAGGAAATTGTTCAAGATGATGCAAACAACAGCAATGAAGAGGACAGGAAAGAGGAAATAAAGAAGCAGCTAATTGATGATGAAGAAGAAGACAAAAAATTATTGGATTCCATACCAGATGAAATTGATGATGACATGGAGCAGGAGGACACAGAAACATCAGCCAGTACGCTACCCAGACCTAAATCAGGAACGGAAGGCTCGGCATTTGATGAGAATTCACTTAATCAACCACAATTTATACATCTGTTGGAGAAGTTTATGGGGCATACTCCAGTCAAACATGTGTTTGATGATCTTGTGCGTTTTGTAAGAGCATCATACAGGGAAACTGATGATGAGAGAATTGCAAGGATGAACAAGGCCCGTATGGAAGCTCGTTCAGCTAAAAGGCGCCACCAAGTAGATGCTCTCTATGAGTTGTGGGATGTCAATACCTCGGGATACCTTGAACTGGATGAGATACAAGTTGTGTTGGGCAAATGGCGGACGGATGGAATTGAGAATTTTAAAGAAGCATTGCAAGTGTTTAGTGAGGTGAACAGTACCCTTGACAAACGTTCTTTCCGCCAGTGCATTGATACCATTGTCAAATTATTAACTGATGAAGATGCATTTGATTCACTCATTGACTTTCTTACTAAGAGTGTCGAGCGGTCTTTCGAAGAGCGCAAGCGTGGTGATGCTCGAAAACGTTGGATGACAATGATCGATGCGGCTGCCCAGACTGGCGGTGCACAACTCGATCCAGTTTACCGCGCGGTGTTTCACGTACTCAATAAAGACGCTGAGGAGTATGGAAAAGGAAAGATCATTAGTGCATCTGTGAGCATGCTCGAAAACAACGATGACGCTGTTCAGCTATACCGCGGGGAAACAGTCTTACGTTATGTGGCTTGTACTGTGGATGACATTCCGCATGTGCTGGGTAAAATTCTTTACAGAGATATGAAGGCGATCAGCTGGACTGTCTTGGACTCGGGAAAGCCGATTCACGTTCCTAAAGTGGCCACTCACTCGGGGATTGTTTTGTGGAATCATTATCGAAAACAGGAGGGTGCAGAGGGCTCGTTCATCGCTCTTCCTCTCAAAGACCACGAGCGACGTGTTATCGGAATCCTTGGCATTGACACCTTAGCGGATCCTCATAAAGCAGTATTTATCACCCACGAGATCAGCTTCTTTCAGGGGGTGGCTAAGGCCCTCAGTCAAGCAATACAGTTTGTTGACATCCGGCGCAAGACACTCAGAGTGGCTGAGTCAGCAGTCTCTTGGATTCTTCGTCGCAGCCCTAATGTACAGAACGTGAATGTGTACCTTGTAGAGCCTGGATTGAAGCCCAGTGATGGCCTTGTTCTTCGTCGCATGATGACCTTGGGTCATAATGGAGTGAATCAACACTACACTCATCCACCCAGACTGGACAGAAAGGATAATCTCTTTAGGGACTACTTGTTCAAATGTGTGGAGAGTTCAGAAACCATTACTGCAGATGCTTATGGTGAGCGGCACATGGCCTTTCCTCTCAGGGATGGAGAAGGGAAAGCTGTTGCTGTGGTAGACATCAGCATTGGTGAACTAAAGGCACTTCCGCCACATGAGAACAAAGAAATACAGCGCATGCTCAGATTGCTTGCTATTGCGCATAGAGAAGTGGCTCGTGAAATCACTTCCGGCGCAGCAGAAAAGAACATCTGGCATACATACCAACTCCTTGCTGCACAAGAACCAAAAGAACTCGGTCGCTGTCTCATATTTGTGTCCTTTACCACTTTCCTCAAGATGGGTATTCTGGAAAGAATCGCTGAAATAGAAAATGAGATGGCGAGAACGCAGAAAAACAAGGCAACTGCGCATCATCTCGGATTGCTGAAAGCACGATTAGCCAAGTTACGAAGAGAATTGATCACACCGAAAGGCGGAGGGGGAGTTCAAGGAGAAGGTTTTGATGTTGCAAAGACTGGTGATGCTAGAATTGGTTTTGTGGGATTTCCATCTGTCGGGAAGTCAACTCTTCTGACCAACCTTGCAGGAGTGTACTCCGAAGTTGCATCATACGAGTTCACCACCCTCACTACAGTACCTGGTGTGATCAAATACAAAGGAGCGAAAATACAACTACTTGATTTGCCTGGAATCATTGAGGGTGCAAAAGATGGTAAAGGAAGAGGACGACAAGTTATTGCAGTTGCAAGAACCTGTAGTTTGATCTTTATTGTGCTGGATGTTCTCAAACCGCTGGGGCACAAACGTCTAATTGAGTATGAGCTGGAAGGTTTTGGAATACGGCTTAACAAGGATCCCCCAAATATATCATTTAAAAGGAAGGAAAAAGGTGGAATCAATCTGCAGACCACATGCAATCAATCAGAGCTGGACATAGATTCGGTGAGGTCAATCTTAAGTGAATATCGCATTGCTAATGCAGATATCACTCTGAGATATGATGCTACTGCAGATGACCTTATTGATGTCATTGAAGGCAACAGAGTTTACATTCCTTGTATTTACATCCTGAACAAAATTGATCAGATATCCATTGAAGAGTTAGATTTAGTCTACAAAATTCCTCATGCCGTACCCCTGTCAGCACATCACAAGTGGAACTTTGATGACTTACTGGAAAAGATATGGGAATACCTCAGTCTTATTAGAATATATACGAAACCAAAAGGTCAATTACCTGATTATGAGTCACCTGTTGTATTAAAAAATGGTCAGTCAACTGTGGAAGACTTCTGCAACTCACTTCACAAGGCCATCATGAAGGAATTTAAGCATGCATTGGTTTGGGGCTCATCAGTCAAATTCAGTCCACAGAAAGTTGGTAAAGATCATATATTGCATGATGAAGATGTTGTTCAAGTAGTGAAAAAGGTATAACATGGTATACACAGCAGTTATCGATGGAAAATCCCAGGAAATGACAGATGTCATTTTGCATGGGAAGTGAAAGTGGACAAACTTCACCTGAAACAACCTTTCAAACCCAAGATTCAGGGACTGTTCTGAATTAAGAGACAGCATCATATTATCGCAATCCTCTACCCTCAAGTCACACCAGTATGAGACATAATTTGTGGGAAAGGGGAAATGAAATAAAGAATGTTTTAGTTACTTTGAAGAGTTGTTGCATTCACCAAAAAATGGAATACACAGGATAGGGCAGAATGGCTTATTCTGTGTGTAACAAATCTTTGTTATGTAATATCTGGACTCCCTTACTCATGGTTACCAACACTGTAATAGCGGCCtattgttaaccctatcgcccctgaggggttgcccattgacgagtaaaattgtctggcattagacagagtaaaatccatttgcactt

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P43690	Developmentally-regulated GTP-binding protein 1 OS=Xenopus laevis OX=8355 GN=drg1 PE=1 SV=1
P32233	Developmentally-regulated GTP-binding protein 1 OS=Mus musculus OX=10090 GN=Drg1 PE=1 SV=1
Q3MHP5	Developmentally-regulated GTP-binding protein 1 OS=Bos taurus OX=9913 GN=DRG1 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004601 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01926 all species →	MMR_HSR1	50S ribosome-binding GTPase	Family	Interproscan
PF13185 all species →	GAF_2	GAF domain	Domain	Interproscan
PF16897 all species →	MMR_HSR1_Xtn	C-terminal region of MMR_HSR1 domain	Family	Interproscan
PF02824 all species →	TGS	TGS domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR045001 all species →	Family	Developmentally regulated GTP-binding protein	Interproscan
IPR012676 all species →	Homologous_superfamily	TGS-like	Interproscan
IPR003018 all species →	Domain	GAF domain	Interproscan
IPR029016 all species →	Homologous_superfamily	GAF-like domain superfamily	Interproscan
IPR012675 all species →	Homologous_superfamily	Beta-grasp domain superfamily	Interproscan
IPR005225 all species →	Domain	Small GTP-binding protein domain	Interproscan
IPR006073 all species →	Domain	GTP binding domain	Interproscan
IPR004095 all species →	Domain	TGS	Interproscan
IPR031662 all species →	Domain	GTP binding protein, second domain	Interproscan
IPR018247 all species →	Binding_site	EF-Hand 1, calcium-binding site	Interproscan
IPR031167 all species →	Domain	OBG-type guanine nucleotide-binding (G) domain	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR006074 all species →	Conserved_site	GTP1/OBG, conserved site	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46788 all species →	EF-HAND CALCIUM-BINDING DOMAIN-CONTAINING PROTEIN 5	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003924 all species →	Molecular Function	GTPase activity	Interproscan
GO:0005525 all species →	Molecular Function	GTP binding	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for aech_s0011.g398.t1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Co-expression network

Genes whose expression across the transcriptome samples of Acropora echinata tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.

No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.

Single-cell expression

Whether this gene can be visualised in the single-cell atlases of Acropora echinata, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.

No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.

Epigenetic marks

Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.

No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.

What you can do with this gene

Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.

Analysis	What it does	Status
Primer design	Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed.	template found	open →
BLAST	Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start.	template found	open →
Expression heatmap	Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it.	no expression matrix	–
Gene family / orthogroup	Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue.		open →
Gene set analysis	Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it.		open →