Gene detail

Detailed information of aech_s0012.g8.t1 in Acropora echinata

Genomic Location: sc0000012_pilon:331641...349435
NR annotation: XP_013384334.1, uncharacterized protein LOC106154518 [Lingula anatina]

Gene Structure

More details in Jbrowse

Sequence

CDS

aech_s0012.g8.t1

ATGGACAGTTATTTTGATGTGCAAAGGTATGTCATTCCCTTATTCGATGAAATGAAAGTGATGGCAAACCTTGTTCTAAACAAGACAACTGGAGAGCTGATTGGTTTCAGAGATCTGGGTGACCCTGACTTGTACTTTGAAGCATTAGAAAAAGTGGACATGATTGCAACACATGCTCTTGCATTCGTTGTCCATGGAGTCTGCAGTGACCTAAAGTTTGGACTAGCTCACTTTGCTACTACTGGCATCACTGAGGCTCAACTGATGCCCCACTTGTGGGAAGCAGAAAGAGTTGCATTTGGTTACCAATGCGAACTGGATGTGAGGTGCCTCTTCCAGGAAGAATTTTCTGGTCGGATAAGGTCAATGCAGGGTGACCCTTTTCCTAGGTCCGAGTTGTCATCAGCTCGAACTCCACATGAGAAACCACGCGAGTCTCCTCGAGGCATTGGTTCAAACCCCCCGATAATAAGGACTTCAGGGAGTGGCTCAGGGAGTGATTCGGGACATAGTAAAGGATCACAAGCGAAACTGGCGGTTGCTCAGCTGAAGATTGAAAACCTCAGGGAGCAGCAAAGATTGAAGGAAAAGCGCCATGAGCTAGATAAAGAAAGCCTCAGAGTAGAATTGCAAATGGAGTTGTTAAATGCTCGCGCGGATGCTGAACAAGCTAAGATTGAGTTATCGATGGCCAAAGAAGTGAGCGAAGGCTTGTCCAACAGAACCATCAGCTCACTTAATGTACCTAAACAGACACTTCACGAAACAGTTGGGAAGTATCTTGAATCATATGATGAAGTTCTGAGACTAACTCCTACCCCACTCCAGCAGCCTGAAAGAACACCTTATGATCAAGGATTTCCTTGCCATTCTACGGATTCCATCAATGTTCCAGAAGTACAAAGGTTCCTGCAGTCGCAACAAAAAGCCATAAAGCAACAGGATGAAACCGTTCGTTTGGTGGCTACTGGTTCCGAGAGGTTGGAGATGCCCAAGAGAGAGTTAATGTCTTTTGACGGTGATCCGAAGGGGTACCCCCGATTCATCAAGGGCTTTGAGCTACCGTGGCCAGGAGTTAGCCCTTACTCCccaccgttctcatctgttggagtagacttctttgggccgatactggtaaaggtgaaacgaagccacgctaaaagatacgtatgcatttttacttgcctcactattcgtgcggttcacatcgaggtggcacacgacctcacaagtgattcatttattcaagcatttaccagattcctaagcagacgcggggcgccgatcgaagtgttcagcgacaatagaaaaaatttcagaggtgcagacaccgaaatcaaggttgctttaagcaagtggaattctgatcgaatcagtacttgtctccgacgtcaaggtgtgcaatggtacttcaatcctcctttggctagccacgctggctgtgtctgggagaggatgattcgctcaatccgaaaaattcttcgcttcctcttgggtaaccagctagttgacgatcaaacactgcttaccttaattgcagaagtggaaaagattctgaacgaccgtcctcttgttcccccgtcaagcgacccacgtgatcctgagcctttgtctccaagcaaacttttccttctacgccctaatatgtgctgccattccgacaaaatgcacggtgttaacgatcaatatgggggcaaacgttggagacaagctcagtatttagcagataccttttggaaacgctggatccgagaatatttaccaacgcttcaagtgagacagaaatggcttgagaaacggccaaaccttgccgtgggcgactacgtgcttCTAGTGGATGAGAATTGTCCACCCAGACGTTGGCCTAAGGGTGTCATCCAGGAAGTATTTCCTGATCGGCAGGGAGTTGTTAGACAAGTTACTGTCAAGACTGCAAGCACTGAGAAACAGAGAGTCATGTTTTTTGCCCTTCAAAAAGTCGAATGTGCAACTTCTGCAGGAGTGTTAGCTAGAATCAAGAATGCCTTTCAAAACCACAACATAGATGCACTAAAGGAACAAACTGTTGGGCTTGGTGCTGATGGAGCAGCAGTCAGTTTTGGAGTAAGGGGAGGAGTTGCCACTCTCATGAAGACACAAGATGGCATTGATTGGCTGATCCCAGTTCACTGTGTAAGTCATCAACTTGAAATGAGCATAGCAGATGCTTTGAAGTCAACAGTGTTTTCAGAGATGGATGAAATGCTTGTCAAAATATACTAA

Transcript

aech_s0012.g8.t1

ATCAGAATGCCATTTAGCCAGATAGAGGCTTTGAGAAGGGAGTAACAGACGTTCACAAGCAGCAGATGGACAGTTATTTTGATGTGCAAAGGTATGTCATTCCCTTATTCGATGAAATGAAAGTGATGGCAAACCTTGTTCTAAACAAGACAACTGGAGAGCTGATTGGTTTCAGAGATCTGGGTGACCCTGACTTGTACTTTGAAGCATTAGAAAAAGTGGACATGATTGCAACACATGCTCTTGCATTCGTTGTCCATGGAGTCTGCAGTGACCTAAAGTTTGGACTAGCTCACTTTGCTACTACTGGCATCACTGAGGCTCAACTGATGCCCCACTTGTGGGAAGCAGAAAGAGTTGCATTTGGTTACCAATGCGAACTGGATGTGAGGTGCCTCTTCCAGGAAGAATTTTCTGGTCGGATAAGGTCAATGCAGGGTGACCCTTTTCCTAGGTCCGAGTTGTCATCAGCTCGAACTCCACATGAGAAACCACGCGAGTCTCCTCGAGGCATTGGTTCAAACCCCCCGATAATAAGGACTTCAGGGAGTGGCTCAGGGAGTGATTCGGGACATAGTAAAGGATCACAAGCGAAACTGGCGGTTGCTCAGCTGAAGATTGAAAACCTCAGGGAGCAGCAAAGATTGAAGGAAAAGCGCCATGAGCTAGATAAAGAAAGCCTCAGAGTAGAATTGCAAATGGAGTTGTTAAATGCTCGCGCGGATGCTGAACAAGCTAAGATTGAGTTATCGATGGCCAAAGAAGTGAGCGAAGGCTTGTCCAACAGAACCATCAGCTCACTTAATGTACCTAAACAGACACTTCACGAAACAGTTGGGAAGTATCTTGAATCATATGATGAAGTTCTGAGACTAACTCCTACCCCACTCCAGCAGCCTGAAAGAACACCTTATGATCAAGGATTTCCTTGCCATTCTACGGATTCCATCAATGTTCCAGAAGTACAAAGGTTCCTGCAGTCGCAACAAAAAGCCATAAAGCAACAGGATGAAACCGTTCGTTTGGTGGCTACTGGTTCCGAGAGGTTGGAGATGCCCAAGAGAGAGTTAATGTCTTTTGACGGTGATCCGAAGGGGTACCCCCGATTCATCAAGGGCTTTGAGCTACCGTGGCCAGGAGTTAGCCCTTACTCCccaccgttctcatctgttggagtagacttctttgggccgatactggtaaaggtgaaacgaagccacgctaaaagatacgtatgcatttttacttgcctcactattcgtgcggttcacatcgaggtggcacacgacctcacaagtgattcatttattcaagcatttaccagattcctaagcagacgcggggcgccgatcgaagtgttcagcgacaatagaaaaaatttcagaggtgcagacaccgaaatcaaggttgctttaagcaagtggaattctgatcgaatcagtacttgtctccgacgtcaaggtgtgcaatggtacttcaatcctcctttggctagccacgctggctgtgtctgggagaggatgattcgctcaatccgaaaaattcttcgcttcctcttgggtaaccagctagttgacgatcaaacactgcttaccttaattgcagaagtggaaaagattctgaacgaccgtcctcttgttcccccgtcaagcgacccacgtgatcctgagcctttgtctccaagcaaacttttccttctacgccctaatatgtgctgccattccgacaaaatgcacggtgttaacgatcaatatgggggcaaacgttggagacaagctcagtatttagcagataccttttggaaacgctggatccgagaatatttaccaacgcttcaagtgagacagaaatggcttgagaaacggccaaaccttgccgtgggcgactacgtgcttCTAGTGGATGAGAATTGTCCACCCAGACGTTGGCCTAAGGGTGTCATCCAGGAAGTATTTCCTGATCGGCAGGGAGTTGTTAGACAAGTTACTGTCAAGACTGCAAGCACTGAGAAACAGAGAGTCATGTTTTTTGCCCTTCAAAAAGTCGAATGTGCAACTTCTGCAGGAGTGTTAGCTAGAATCAAGAATGCCTTTCAAAACCACAACATAGATGCACTAAAGGAACAAACTGTTGGGCTTGGTGCTGATGGAGCAGCAGTCAGTTTTGGAGTAAGGGGAGGAGTTGCCACTCTCATGAAGACACAAGATGGCATTGATTGGCTGATCCCAGTTCACTGTGTAAGTCATCAACTTGAAATGAGCATAGCAGATGCTTTGAAGTCAACAGTGTTTTCAGAGATGGATGAAATGCTTGTCAAAATATACTAATTGTACAAAAACAGCCCAATGAAGATGAGACAATTGG

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF21787	TNP-like_RNaseH_N	TNP-like, RNase H N-terminal domain	Domain	Interproscan
PF18701	DUF5641	Family of unknown function (DUF5641)	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR012337	Homologous_superfamily	Ribonuclease H-like superfamily	Interproscan
IPR048365	Domain	Transposable element P transposase-like, RNase H domain, N-terminal	Interproscan
IPR036397	Homologous_superfamily	Ribonuclease H superfamily	Interproscan
IPR040676	Domain	Domain of unknown function DUF5641	Interproscan
IPR001584	Domain	Integrase, catalytic core	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR22955	RETROTRANSPOSON	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0015074	Biological Process	DNA integration	Interproscan