Genomic Location: sc0000017_pilon:3287786...3297022
NR annotation: XP_029189284.2, E3 ubiquitin-protein ligase UBR2-like [Acropora millepora]
Species Acropora echinata · all data for this species · gene families
| CDS |
| aech_s0017.g227.t1 |
| Transcript |
| aech_s0017.g227.t1 |
| Protein |
| aech_s0017.g227.t1 |
| UniProt accession | Description |
|---|---|
| Q8IWV8 | E3 ubiquitin-protein ligase UBR2 OS=Homo sapiens OX=9606 GN=UBR2 PE=1 SV=1 |
| Q6WKZ8 | E3 ubiquitin-protein ligase UBR2 OS=Mus musculus OX=10090 GN=Ubr2 PE=1 SV=2 |
| Q8IWV7 | E3 ubiquitin-protein ligase UBR1 OS=Homo sapiens OX=9606 GN=UBR1 PE=1 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0003156 (this species only) · gene tree & orthology |
| Ubiquitin family | E3|E3 activity|N-domain · all ubiquitin genes in this species |
| Ubiquitin family | E3|E3 activity|UBR-box · all ubiquitin genes in this species |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF02617 all species → | ClpS | ATP-dependent Clp protease adaptor protein ClpS | Family | Interproscan |
| PF02207 all species → | zf-UBR | Putative zinc finger in N-recognin (UBR box) | Family | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR003126 all species → | Domain | Zinc finger, UBR-type | Interproscan |
| IPR003769 all species → | Domain | Adaptor protein ClpS, core | Interproscan |
| IPR014719 all species → | Homologous_superfamily | Ribosomal protein bL12, C-terminal/adaptor protein ClpS-like | Interproscan |
| IPR039164 all species → | Family | E3 ubiquitin-protein ligase UBR1-like | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR21497 all species → | UBIQUITIN LIGASE E3 ALPHA-RELATED | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0008270 all species → | Molecular Function | zinc ion binding | Interproscan |
| GO:0030163 all species → | Biological Process | protein catabolic process | Interproscan |
| GO:0061630 all species → | Molecular Function | ubiquitin protein ligase activity | Interproscan |
| GO:0071596 all species → | Biological Process | ubiquitin-dependent protein catabolic process via the N-end rule pathway | Interproscan |
aech_s0017.g227.t1.Genes whose expression across the transcriptome samples of Acropora echinata tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.
No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.
Whether this gene can be visualised in the single-cell atlases of Acropora echinata, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.
No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.
Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.
No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.
Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.
| Analysis | What it does | Status | |
|---|---|---|---|
| Primer design | Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed. | template found | open → |
| BLAST | Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start. | template found | open → |
| Expression heatmap | Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it. | no expression matrix | – |
| Gene family / orthogroup | Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue. | open → | |
| Gene set analysis | Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it. | open → |
