Gene detail

Detailed information of aech_s0020.g234.t1 in Acropora echinata

Genomic Location: sc0000020_pilon:3328780...3344139
NR annotation: XP_044176732.1, uncharacterized protein LOC114969848 [Acropora millepora]
Species abbreviation AECHI · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

aech_s0020.g234.t1

CGACAAACTTTCTTGAATGAGGAACATTTTCCGTAGGGAAATTCTTACGGTCGTTTCTTCGCACTTTGTTGCTTGAGGAGCAGATGAAGTTCCTTTTTCCAGCAAAAGAGAGTTAATTAAGAGGTATATTAACCATTGGAATCTGAAATTTATACAAATTTTGGTCAAGTTTGTGGCGAACTCTGTTAATTATGGACTCAGCGCAGCTGAATGAACTTTTGGAGTGTCCGGTTTGTCTAAAACAACTTGATCAAACGTGCAAGGTTTTACCGTGTCAACACACCTTCTGTAGACGATGTTTGACGGACGTTGTCGAGACCAGAAAGGAATTGCGATGCCCTGAGTGTAGGATTCTAGTCGAAAAAGACGTTGACGATTTGCCGGTGAATATCTTTCTCGTGAGGTTTCTGGAAAGTTTGAAATGGGGCCAACACACCAAGAAATCTTTGGACAGCATAGGACCAGAAACAAGAGATAATGATTCTGATAAGGTCATCACTCCATCTGCAAGAGCACTGTATGATTACGAACCTAAGGAAGATGGAGATTTACCTTTACACAAGGGAGAGATAATTACCTTGCTAAAACGAGTGGATGAAAACTGGTATGAGGGTTTTTGTAATGGCCGTCAAGGGTTCCTTCCAGCAAATTACATTGAGGTGATCAACCCTCTTCCAAGCTTAGATGATTCATTTGACCGTCCCATTGCAAAAGCTCTGTTTGACTTTGAAGATGAAGAGGAACAAGACTTACTTCCCTTTAAGCAGAATGAAATCATCACAGTGATCCGTCGAGTTGACGAAAACTGGTGTGAAGGAGAGCTTAATGGCAAACAGGGTATCTTTCCAGTGACCTTTGTTGAGCGTCTTGTTATTGCTCTCTGCAGAACTGTCCCAGCTGGGCACACTGCTTTATCGCCACCGTCTTGCGATTTCTTTTCGCCAGTGCCCTCTGTTTTTCAGGTTCATCATCGACTAGAGAATCCTCCAGCTAGTGAAAGGTGCCGTGTCGTTGTCGCTTATCCGCCTCAACACGACGCCGAGCTGGAGCTCAGAGTCGGTGAGATCGTGCACGTGACAAAAAAGCGTCCAGATGGCTGGTATAAGGGGACGCTGGAAAGAAATGGCAAAACGGGTTTATTCCCTGGAAGTTTCGTGGAGAGCTTTTAAGGATGCGTTCCAAAAGTAATCGTCGTTCATGTTTTGTACTCGTCGCAACCTCGTGTAGTATGTATACAGAATTCTTCGTCAGGCAATTTGCCGATGATTCTGGTCAAAAGGAAGTCTTTATGCTCAATAGATTTTCTTTGCACTGATTAATGTCATTGCAAATTTCAAGTTGTATAGTTCTTTCTTAATAACTGTAATTAACTTGTTATTTGTTAatcaccatcatcatcattattgtcgtcctcgtcatgattatattcatcgtcaAATTcactgatctcaagaaatagattggatcgagcttctgttgtttagaaagtgaagccaagttagcagcagccatcttgttgggaccaccttgagaccctatcgtacatgttagcatggagatgaaaatcatttcgatgctacccgcaaacgaattgtttttccgttaaatagtgaagaagttatgtttgtcttaaatgttacccatctacctatatgccatgttacccatggcatatagtaagctttaccgcgatagtagtcccaacaagatggcgccgctggcttcaattttgtggaagcgagaacaataggttgctgaatccaCGATCATTGTCACAGTGTTGAAACAATTTCACACGTGGGAGGATTGAGGAGTGTcaggagccgatcagctggagcatgcaactcccatgctaagtctatgtcacggcatttttatagactgatctatttttagtataCccttttcttgtgtgaaagaaagaccgttTcggtccagtgacgcagtgacgtcaattagtttcttgtgattggccatcacactcccacgggagtcactttccagggaaattcaatctaaaaaCtaaatcggtctatgaaaacgccgtgacaaaaatatactggaggtgcatgctactactcataggctcctgggagtgttttatagTCCTTTTCAGATTTGTTTTGTGCGGAGGATGTTTTCGATAGATTTTGTAAAAGGACGTGCTGCACGGCCAGTACCCCCAAAGTTCATAAACCATGCAAATCAAGGGTGCCAAAGAACGAAACGTTTTAACGATAATGCCAGCCCTCTGCTTTGTATCAATCATGTTATAAGTGTTCGTTGATGTCGCGCATGTTGTGTGTGCTTTCGAGATGAGGCCCCCAATTGCTGGAATTAGCGCTCTACCTGGGTGATCACGACCGCTCATACCCAGtaggcctttttcaaaaataccataacactctttacttttcctccaaaatttttcataacattgtttttattcgcttttgggacttactatgatcccaagagagactggaaacaatgcttatgcaaaaatttggagggacaaacaaagagtattatggtatttttgaaagtggcccattgctaGTGACCGGGCGATTTTATGGACACCAGGCCTAACGCAATGACGAAGGTGGCGGAAACAGCTCAGCATATTTAATTTGGGGGTTTAATATAAGcagcTACGATGTCTACGGTAGATAAAACCAAATCAAATGGTTTTCAtacggtagataaaacgtcacttaaaaataaacatttaggctagagtaactattttgcaattattgctttttgccggcattccatgttgttgacaaactgcagtaaaaatggactggtagaagcgacgtggaatgaaatagagagaatgaaaaattttatagttggttgttcacggtgtccttatttcacgttgtcatttggcagaccacgtcaaagaattctattaaagtgcctgtagcgcg

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q6NRD3	E3 ubiquitin-protein ligase SH3RF1 OS=Xenopus laevis OX=8355 GN=sh3rf1 PE=1 SV=1
Q28E95	E3 ubiquitin-protein ligase SH3RF1 OS=Xenopus tropicalis OX=8364 GN=sh3rf1 PE=2 SV=1
A5D8S5	E3 ubiquitin-protein ligase SH3RF1 OS=Danio rerio OX=7955 GN=sh3rf1 PE=2 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0006151 (this species only)
Ubiquitin family	E3\|E3 activity RING\|RING · all ubiquitin genes in this species
Ubiquitin family	UBD\|Other\|SH3 · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF14604 all species →	SH3_9	Variant SH3 domain	Domain	Interproscan
PF00018 all species →	SH3_1	SH3 domain	Domain	Interproscan
PF00097 all species →	zf-C3HC4	Zinc finger, C3HC4 type (RING finger)	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001452 all species →	Domain	SH3 domain	Interproscan
IPR050384 all species →	Family	Endophilin/SH3RF	Interproscan
IPR017907 all species →	Conserved_site	Zinc finger, RING-type, conserved site	Interproscan
IPR036028 all species →	Homologous_superfamily	SH3-like domain superfamily	Interproscan
IPR001841 all species →	Domain	Zinc finger, RING-type	Interproscan
IPR013083 all species →	Homologous_superfamily	Zinc finger, RING/FYVE/PHD-type	Interproscan
IPR018957 all species →	Domain	Zinc finger, C3HC4 RING-type	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR14167 all species →	SH3 DOMAIN-CONTAINING	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0016567 all species →	Biological Process	protein ubiquitination	Interproscan
GO:0032436 all species →	Biological Process	positive regulation of proteasomal ubiquitin-dependent protein catabolic process	Interproscan
GO:0046330 all species →	Biological Process	positive regulation of JNK cascade	Interproscan
GO:0061630 all species →	Molecular Function	ubiquitin protein ligase activity	Interproscan
GO:0046872 all species →	Molecular Function	metal ion binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for aech_s0020.g234.t1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.