Detailed information of aech_s0021.g144.t1 in Acropora echinata

Genomic Location: sc0000021_pilon:2299431...2317879
NR annotation: XP_029180998.2, transcription elongation factor SPT5-like [Acropora millepora]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot
Uniprot termDescription
Q5R405Transcription elongation factor SPT5 OS=Pongo abelii OX=9601 GN=SUPT5H PE=2 SV=1
O00267Transcription elongation factor SPT5 OS=Homo sapiens OX=9606 GN=SUPT5H PE=1 SV=1
Q5ZI08Transcription elongation factor SPT5 OS=Gallus gallus OX=9031 GN=SUPT5H PE=2 SV=1

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF03439Spt5-NGNEarly transcription elongation factor of RNA pol II, NGN sectionFamilyInterproscan
PF00467KOWKOW motifFamilyInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR005100DomainNGN domainInterproscan
IPR041976DomainSpt5, KOW domain repeat 3Interproscan
IPR039385DomainNGN domain, eukaryoticInterproscan
IPR041978DomainSpt5, KOW domain repeat 5Interproscan
IPR014722Homologous_superfamilyLarge ribosomal subunit protein uL2, domain 2Interproscan
IPR008991Homologous_superfamilyTranslation protein SH3-like domain superfamilyInterproscan
IPR039659FamilyTranscription elongation factor SPT5Interproscan
IPR005824DomainKOWInterproscan
IPR024945DomainSpt5 C-terminal domainInterproscan
IPR036735Homologous_superfamilyNusG, N-terminal domain superfamilyInterproscan
IPR041973DomainSpt5, KOW domain repeat 1Interproscan
IPR041980DomainSpt5, KOW domain repeat 6Interproscan
IPR041975DomainSpt5, KOW domain repeat 2Interproscan
IPR041977DomainSpt5, KOW domain repeat 4Interproscan

 PANTHER
PANTHER termDescriptionSource
PTHR11125SUPPRESSOR OF TY 5Interproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0003729Molecular FunctionmRNA bindingInterproscan
GO:0006357Biological Processregulation of transcription by RNA polymerase IIInterproscan
GO:0006368Biological Processtranscription elongation by RNA polymerase IIInterproscan
GO:0032044Cellular ComponentDSIF complexInterproscan
GO:0032784Biological Processregulation of DNA-templated transcription elongationInterproscan
GO:0005515Molecular Functionprotein bindingInterproscan
GO:0006354Biological ProcessDNA-templated transcription elongationInterproscan

 KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K15172SUPT5H, SPT5; transcription elongation factor SPT5-Messenger RNA biogenesisko03019deepkoala

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