Gene detail

Detailed information of aech_s0021.g28.t1 in Acropora echinata

Genomic Location: sc0000021_pilon:305788...318015
NR annotation: XP_029194655.2, FAS-associated factor 2-like isoform X1 [Acropora millepora]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

aech_s0021.g28.t1

TGTGTCGCGAAGGTACCTGGGAAATAGGAACAAAATGGCGGAAGCAAACGATGATTCGGTTTCTCGAAGTGAGATTTTGGCTCAATTTCAGGATATAACGGGGTACAGTGATGCTGAAAAATGTAGAATTGTTCTTGAGCGTCACAACTGGGACATTGAGACTGCTGTCCAAGATACTTTGAATGAAGCTGAAGGTTCCCAACCAGTTTTTCATCCTCTGCAAAACTCATTTGATGGCAGTGATGAAGAGGACTATTCAGCAAATCACATAAACACGACACAGAACCAAGTATCATCAGCCAGAGATGCCACAGGTGCACCAACTCTAAACACAGAGGTTCAGAGGTTTGGTCAGAGCTGGTTGCTGTGGGCTCTATCTGTCCCATTTCTTCCCTTTAGATTTGCTTCCAGTGTACTATGCGATATTTTTGGATGGATAGGATCACTTCTATGGCCATCTGCATTTCAAGCTCGGACAACTCCTCTTGAAGATGTGTTGCGGTTTAAAGACGATTTTGAAAGGGAATATGGTGCCATTCATCCAACATTTTATCAAGGAAGCTACAGCCAGGCTCTGAATGATGCAAAAAGGGAGCTCCGCTTTCTTCTAGTTTATCTTCATAGTTCAGAACATCAGGATACCGAGGAATTTTGTAGGTCAACAATGACAAATGAAGGCTTTAAGGAGTATGTGAATGGAAACATGTTATTCTGGGCTGCGAATGTGAAATCAAGCGAAGGCTATAGAGTATCTCGTGCTGTGCGTGAAGCTACGTATCCTTTCCTGGCTCTTATTTGTTTAAGGGATAACCGAATGACAGTCGTCGGGAGAATGGAGGGAATATTGACTGTTGACGACTATATTTCACGTTTGGCACGTCTAATAGCGGACAATGAGGCCCTTTTGGTTGCGGCGAGAGTTGACAGACAGGAGCGCACACAAGCCCAACAGCTCCGTGAAGAGCAAGACGAAGCTTACCTGGAATCTGTTCGAGCTGATCAAGAAAAAgaacgaaagaaacgggaagaagaggacaaaaagcgacaggaagaagaaacgagaagaagaaaggaagaagccaaaagaaaCCGAGAACATTCTATAGCTCAAGACCGCGTGGATAGGAAATGCCGTGTGCCTGACGAACCAGATGCTACAAATGCTGATTCTATCCGTGTGCTGATTAAATTATCCAATGGAAAACGTTTGGAGAGAAGGTTCCTTAAATCTCACCCGTTACAAGCGTTGTACGACTTTGTATTTTGCGACGAAGAATCACCAGCAGAATTTGTCCTTGTTTCAAACTTTCCACGCAAAGTCTACGCGCTGGACTCCGCAAGTGAACATCAGACCCTAGAGGATGCCGGTATCGAAACCAATGCAATGTTGTTTGTACAAAATATTGAAGAGGAGAGTGACAGTGATTGACACGTGACGAGAGTTATCAGTACAATCAACGTCATCAGCCTACAACGCCTAGGAACTAAGCTGAGCCATCAGATTGTTGAGTCATTTTGGAAACACATGGTAAAAAAATTGCCGTTACAAAGAATGATTATCCCTGaagagaccggtttcaaattgttcgagaacaaagcaatggaatggagctctagagaaattaatttgcattttcgtttgtcaacaacagaggaaaaggcaaattatttccttgaatctggaaatcCGAATCTTTTGTTCtggtcgcaaaatttgaaactggcctgttGTGGTAAAGATAATCGCCCAATCACTGTGTGACTTAACGCCCACGTGACATCCTCTGACTATGGGAACCTAAAGTTGCCTTGCAGATGAAACAATGATCTGGCTGAAGAAAGGAAGTCCTCTGGTATCGAAACTTTGATTTGCAAGCTGTGGCGTGACGGAAAACCGACGGTACGAAACAAAGGCGAAGTGGTACCATATCATAAAATTTTAATATTTACCAAGATGTAAAAAAAAAACATGTTTTAGAATAGCGCTAAACGATAAACGTACCGCGAACTTCCGAAACATCAGTCCACACTCGTGCACGTTTCTTTAAGGTTCACAGTTAAGTGATGTCAAGTCTATAACTTCACTGTCGAGGTTTTACTTTTTCCAGTTTTTTGACCTATCATTTTATCCACGTTTGTCAAATGTTGGAAGGGTTTTCTTCGGAATAACCTTAGTGGGGAAGGAGTTTCTTATgagagttgtcccattcacctacgtaatgagattcctgaatgtatgtggacgtcacaaagtgtctccctgagataattttcaagcctcaccttaaacaaatagcactaggacaagttctcaggcttaagtggacaccggccatatgacatcttgtgtcgtctatacaaagcggcttgaatcttatcggcagctgtattggacatTTTTCTCTTATTGAAAGAGTGTCACTGAAAGATTTGTCAGAGGAAAGGGAGGTTGGATGCAGCGAAAAGAATTAAGGGGGTGGATGAGGGGACAAATGAGAGATTCTTTGTTGAGCGTCGTATTGCCAACTAAGGCGGTTCGTAGTCAGTTCTTGTTCCTGTCGACCTTTCGTCGTTCACTTCATCGGCAATAAACAAAATGATAACTTTCGTTTCTCTTTTGACGAGAATGCATTGTGTAAGTCAATTCTTATTTTTAAAGAAGCTGGTTGAATTGGGAGAAGGGGAGAATCGTTAGTAGTGGTTTTAAATTAACAATAAAGATCTAAACTAAAT

Protein

Uniprot

Gene family

Uniprot term	Description
Q3TDN2	FAS-associated factor 2 OS=Mus musculus OX=10090 GN=Faf2 PE=1 SV=2
Q96CS3	FAS-associated factor 2 OS=Homo sapiens OX=9606 GN=FAF2 PE=1 SV=2
Q2HJD0	FAS-associated factor 2 OS=Bos taurus OX=9913 GN=FAF2 PE=2 SV=1

Gene family	Subfamily
Ubiquitin Family	UBD\|Alpha-Helix\|UBA
Ubiquitin Family	ULD\|UFD\|UBX

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00789	UBX	UBX domain	Domain	Interproscan
PF14555	UBA_4	UBA-like domain	Domain	Interproscan
PF21021	FAF1	Fas-associated factor 1	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001012	Domain	UBX domain	Interproscan
IPR036249	Homologous_superfamily	Thioredoxin-like superfamily	Interproscan
IPR029071	Homologous_superfamily	Ubiquitin-like domain superfamily	Interproscan
IPR006577	Domain	UAS	Interproscan
IPR050730	Family	UBX domain-containing protein	Interproscan
IPR009060	Homologous_superfamily	UBA-like superfamily	Interproscan
IPR049483	Domain	Fas-associated factor 1/2-like, UAS domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23322	FAS-ASSOCIATED PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0005783	Cellular Component	endoplasmic reticulum	Interproscan
GO:0030433	Biological Process	obsolete ubiquitin-dependent ERAD pathway	Interproscan
GO:0043130	Molecular Function	ubiquitin binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K18726	FAF2, UBXD8; FAS-associated factor 2	-	Messenger RNA biogenesis	ko03019	deepkoala