Gene detail

Detailed information of aech_s0022.g173.t1 in Acropora echinata

Genomic Location: sc0000022_pilon:2705123...2714953
NR annotation: XP_020601267.1, threonylcarbamoyladenosine tRNA methylthiotransferase-like [Orbicella faveolata]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

aech_s0022.g173.t1

AGTTAGCGAAGATACGCTTCTCTTTTCGTTCGTAAATGAAAAGAAAATGACCCTGTACTTTCATTAGCTTTGGTGTTTTTGGTGAAAACTGTGCTAAGAATGCCAGCTTGTGAGTTGGAATTGTGTGATATTGAAGATGCTGTGAGCAAAGATGATATTACACCTAATGATCGTATAATTCATCGGAACATTGTCCTTCCCAAGAAAAGACTAAGATCCGCACGGAAAGTTCATGATGAATTGCCAGTGGGGGACAGTATCATTCCTGGAACTCAGAAGATTTACATCAAAACCTGGGGATGCTCACATAACAACAGTGATGGTGAATACATGGCAGGACAACTAGCTGCCTATGGATACAAAATTACAGAGGATTCAGGTGCTGCAGATTTGTGGTTGCTAAATAGCTGCACAGTAAAAAATCCATCAGAAGACAATTTCAGAAATGCAGTAAAGAAAGCACAAGAACTTGACAAACACTTGGTGGTGGCAGGTTGTGTACCTCAAGGACAACCAAAACATCAAATCATCAAAGGGATCAGTGTGATTGGGGTGCAGCAGATTGACAGAGTAGTGGAAGTTGTGGAAGAGACATTAAAAGGTCATACTGTAAGGCTTCTTGGTCAAAAGAAAGTGGCAGGAAAGAAGAGTGGTGGAGCACCACTTGATTTACCAAAGATAAGGAAAAATCCCCTGATAGAAATCATAGCAATTAACACTGGGTGTCTCAACCAATGTACTTATTGCAAAACAAAGCATGCTCGTGGAGATTTGGGAAGCTACCAACCTGAAGAGATTATTGCCAGGGCTAAGCAAGCATTTGAAGAGGGAGTCGTGGAGTTATGGTTGACCAGTGAAGATACAGGAGCGTATGGTAGAGACATTGGTGTGACATTGCCTGAGTTATTGTGGCAACTTGTGGAAGTTATACCAGAGGGAGCCATGTTGAGGATTGGAATGACAAATCCGCCATACATTCTGGAACATTTAGAGGAAATGGCCAAAATTCTGAGTCATCCCCGGGTGTACAGTTTTCTACATGTTCCAGTGCAAAGTGCTTCTGATAGTGTGCTTGCCGACATGAAAAGAGAATATTGCGCGGATGATTTTAGAAATGTTGTTGACTTTCTCAAAGAGAAGGTCCCCGGCGTCACCATAGCAACGGATATAATCTGTGGTTTCCCGACGGAAACATGGGAAGATTTCCAGGAGACAGTGGCGTTGGTGGAGCAATACAAATTCCCCAGTCTCTTTATTAATCAGTTCTACCCACGACCAGGGACTCCTGCAGCGAGGATGAAGAGACTTCCAACAGAGGAGGTGAAAAGGAGAACAAGGGAGATCTCTAAAGTATTCCATTCCTATCAACCATATGATCACAAGGTTGGAGAACGGCAGATAGTTCTCATAACAGAGGATTCAAAAGATGGAGCTCATTTTGTCGGACATAATAAATATTACGATCAGGTCCTCATTCACAAGAGTGAAGGAGATCTGATGGGCAAAATGGTTCACGTGGAAATTTTATCTGCTGGGGAACACTTTCAAATGGCGCGCATGCTCCATGAAATGGCAGTGCAGTCGCCGGGGTCAGTGGAACCACTCCCCAAGGGCGCGGTCAGCGGTTTAAGAACTAGGCATATGCCTACTGACATTGTACAGAATGGAGAAGACCCTTGGAGTAATTGGAAAAGAGCGGCAATGGTCGTTCTTTTTGCCGCAGTTTTAATTGATGTTTTAAGACTTCTGTATCTGTGGAAGCACAAATGACGAACTACGGCTCTTTTCGTTTTTCACCCTGATGTCTTTAGCTTTCATGACTGAAAATTGCAAGCTTTCGGCTGAACTCTTTTGTTTGCGCTGAGGTAAACAGTTTTTATCCGTTACTACTTTATTGACTTGTAAGTCTCTTTGCTAACTTTCTGTGTCGAGTACTAACAAGAGAAGTACGCCAGTGTAAAACGATACATTTTGTTACATTAAGATATTTACAATGTAATACAACCTATTTACAACACTTTTACAATACTTAGAAAAAAGACAATACTTAGAAAAAAGACAACAGAAATAG

Protein

Uniprot

Uniprot term	Description
Q6NS26	Threonylcarbamoyladenosine tRNA methylthiotransferase OS=Xenopus laevis OX=8355 GN=cdkal1 PE=2 SV=1
Q91WE6	Threonylcarbamoyladenosine tRNA methylthiotransferase OS=Mus musculus OX=10090 GN=Cdkal1 PE=1 SV=1
Q6P4Y0	Threonylcarbamoyladenosine tRNA methylthiotransferase OS=Xenopus tropicalis OX=8364 GN=cdkal1 PE=2 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF04055	Radical_SAM	Radical SAM superfamily	Domain	Interproscan
PF00919	UPF0004	Uncharacterized protein family UPF0004	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR007197	Domain	Radical SAM	Interproscan
IPR038135	Homologous_superfamily	Methylthiotransferase, N-terminal domain superfamily	Interproscan
IPR020612	Conserved_site	Methylthiotransferase, conserved site	Interproscan
IPR006466	Family	MiaB-like tRNA modifying enzyme, archaea/eukaryota	Interproscan
IPR002792	Domain	TRAM domain	Interproscan
IPR006638	Domain	Elp3/MiaA/NifB-like, radical SAM core domain	Interproscan
IPR005839	Family	Methylthiotransferase	Interproscan
IPR013848	Domain	Methylthiotransferase, N-terminal	Interproscan
IPR023404	Homologous_superfamily	Radical SAM, alpha/beta horseshoe	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11918	RADICAL SAM PROTEINS	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003824	Molecular Function	catalytic activity	Interproscan
GO:0051536	Molecular Function	iron-sulfur cluster binding	Interproscan
GO:0051539	Molecular Function	4 iron, 4 sulfur cluster binding	Interproscan
GO:0035598	Molecular Function	N6-threonylcarbomyladenosine methylthiotransferase activity	Interproscan
GO:0035600	Biological Process	tRNA methylthiolation	Interproscan
GO:0006400	Biological Process	tRNA modification	Interproscan
GO:0016740	Molecular Function	transferase activity	Interproscan
GO:0035596	Molecular Function	methylthiotransferase activity	Interproscan
GO:0005783	Cellular Component	endoplasmic reticulum	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K15865	CDKAL1; threonylcarbamoyladenosine tRNA methylthiotransferase CDKAL1	EC:2.8.4.5	Transfer RNA biogenesis	ko03016	deepkoala