Gene detail

Detailed information of aech_s0022.g29.t1 in Acropora echinata

Genomic Location: sc0000022_pilon:535711...548627
NR annotation: XP_015759218.1, PREDICTED: F-box/WD repeat-containing protein 7-like [Acropora digitifera]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

aech_s0022.g29.t1

ttctattactGTTAGACAATCATCTCTAGTTTTCATTTCTCAACTTTTCCTTCTGAACCTAAAATGCGTTGATTCATTTTATAACAATGCGCGAAAAGTGATACTCACTTTGGATCATGTCGAAGTCGACCGCCAAATTCAAGTAAACAGATCTCGTTCCAGTCCTTCCCGTTCTCTATGTTTGTAATGGCCGACAAAGAAGACCAGCTAAAACTCACCTCCAATGAAATCAAGAAATTTCGGAAAAAGCTTCGCCAGATAAAGAATCTCGAGGAACTAGATCGTGATCTTTCAGAGGAGGAACTTTTGAAGATTTCTAAGAAAGATGAATTTCGCTCCAAAGTTCAGCATCTGGTAGCAAAGTTTGAGGAATTGAAGTCTGATGCACAAAAAATGGAAACTGAACAAACGCACGTTGAAGCAGCCTCGATCGATCAAGAGGAACAAAGAGCCATTGAAAGCACAGAACTTTTAGCAGAGACCAACGGCAACAGCCATGAGGATGCTCCCATTGAGATTCCTGAGCAGGATACAAATGAGGCTACCGTAAGTCAAGCTGATGACCAAGCCTTTGTGTTAGAAGCTCGCCCAGCTATCCGTATTCCAGATGTAGTGTTAGAGGCCCAGACCCGGAGAGCACCTCTTTTGCCGTCTGATAGCATGACCATGAGATTTCATGTCAGGAATTTTGAGGGCCACAATGACATCATTTATGGTGTTGATTGTCAAGGATCTGTTCTGGTGTCTGGAGGGCGGGACACGATGCTGAAATTCTGGAATGCAGACACTGGCCGAGAGATTAAAAGCATGGGTGGACATTCAGGAACAATAACATCGGTGTTGCTTGTACCAAAAGAGAACAACGCTTCATCGTCTGGCTTCCAAACTGAACAATTCTCCGTGCTGACAGGCTCAAAAGATTGTTCCATGAAAATATGGTCTCTCGCGAAAGGGCAAATCACAAGGTCGATGTACGCATTTTCTCCCGTGGAGTGCCTGGATTGTAACTGTAACAATATAACTGCAGCTGGTTTAGAGGGTGGGAAGGTGGAGTTATGGGATCTGGAGTCGGGAACTTCTTTGAGATCTGTACGAGGTCACGACGAAGATGCTGTAACAGCTATCAAGTTCCAGGACGACCGGGTGGTCAGCGGCTCAGCTTGCGGGGTGGTCAAAATTTGGGACGTTCGTGACAATTCTCTCAAGCCTGTAATGAGCTCAGAGCATACCTCTGCGTGTAACGCCACCGAAGGCGTCACTGTTAAACCAAGACGCGTGCGCTGCTTAGCTACGACTCAGGACGCGGTGTATTGGGGAGATGACGGAGTGAACATGAAAGCAATGGATTTAAAGACAGGTAAACTTCGCAAGATTCGTAACCACGTGACAGAGTTTGGATGTACCGGTGCCATGGCAACCACTGGCAAGTGTCTTGTGAGCGCGGGCTATGACTTGGATCGTGGAAATGGATATCTGAATGTGCGCAGTCTTCCCTCCGAGGAATACTTGGCAACCGTTGATGACGAAAGTACTGGTTGTATCACGTGCTTATCGTGCACCGAGACGACGAGTGACAAGGTGACGCTTCACAGGATGTGCTCGGGAGGACTGGAGCTGAAAGTATGGGATCAGCTGCCGAGGTCAAAGGTCAAGAAGCGTACCAGACCAGAAACTGATGACGTGTACGTCTCGGCGAAACACGTTCGCCGTTACGGTCTCCCCGATATTAGTGATACGGAGAGTAGCGAAGAGGACGAGGACCAACCGGAAGGAGATGATTCTGATGACGAAGATGACGTCAGTAACACCGGAGGTACATCACGATCTTGGTGCGCAATATCATAACGAATGAGAGCCTGTCAGGAAGTGGTTGCACTCGCCGTGTTAAGGAGCGTGCGCAGATTTCGTTGTGTGAAGTATCACAAATATTTTGAATGCGTTTGTACAGAAACCAACGTATACTTTTTCTCTGCACTCTGTTTCAAATTGGTTTAAGGACGAAAAGGTAACGTCACGTCGACACTTCACACCGTGTAACAAGGAAGCAATTTGAAGTTCCTTCGGACATCTCCGCGGCGAAAGAAAACATTCGAACCAGGGAAACGTCATGAAATGGTGTTGAATCCTCAACAGCTAAAATCTTAGCTATGAATTTCTTCCATGACTGGGATTCACAAAGGAGAATATGAGGCCAAGCTGACTTTTATTGAGACACAAATGGCCTGAAGAATGCACTCTAACGAAACAGTGCTTCGCTTATCTTCTCCCTTTTATGCCCTTACTCACAACAATTGAACAATTTGAGATTAATTTCTCTTTGAAATTCGTTACTTTGTTATTAACGTGGTTTTATTTAAGTTTTTGTTTCGTTTCTGGATACGAAATACTTCTCTGGAATGGGAAAAAAAACTTTTATTCAGG

Protein

Gene family

Gene family	Subfamily
Ubiquitin Family	UBD\|Other\|Beta-prp
Ubiquitin Family	E3\|E3 adaptor Cullin RING\|CDC20
Ubiquitin Family	E3\|E3 adaptor Cullin RING\|DWD

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
--	--	--	--	--

InterPro

InterPro term	Type	Description	Source
IPR001680	Repeat	WD40 repeat	Interproscan
IPR036322	Homologous_superfamily	WD40-repeat-containing domain superfamily	Interproscan
IPR015943	Homologous_superfamily	WD40/YVTN repeat-like-containing domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR22847	WD40 REPEAT PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K14841	NSA1, WDR74; ribosome biogenesis protein NSA1	-	Ribosome biogenesis	ko03009	deepkoala