Gene detail

Detailed information of aech_s0022.g48.t1 in Acropora echinata

Genomic Location: sc0000022_pilon:707161...713172
NR annotation: XP_015758415.1, PREDICTED: ankyrin repeat and SOCS box protein 9-like isoform X2 [Acropora digitifera]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

aech_s0022.g48.t1

ttaagtccaactccttgacactgAAAAAAATAATTTCAGAGCATGTGACATTAATATTATTGTTGTTCAATGTTCCTTAGGGGCAAAATGCAATGTACAAGAGAAAGACGGCCTTACTCCTCTTCATCTTGCTGTTTACCATGGCCATGTTAAATGTGTCACGGTATTGATTGAACGTGGTGCTAATGTCAACAGCACATCACGATTTGGCAGCACTCCTTTGCATCAAGCTGCTTATTTTGGACATTTTGACTGTGCTTCAGTACTTCTTGCAGCTGGTGCATTGGCAAATGTTGAGGAGGCTTGGGGTCAAACTCCACTATTCTTGGCCGCACAGCGGGCTCACAGTGATGTAGTACGGATCTTGCTGCATTATGGTGCATATGTAGACAAGATGGACAAAGCTCACTTTAAGACTGGTCTCCATGTGGCGTGTGAAGCTCAGAGTGTTGCTTGTGTGCAGTATTTGCTTGATGCTGGAGCTGATCCCAACGTGCAAGCAGAACATGGCCGCACCCCACTACACATAGTTCTCAGAGGGGAGGAGTCCGGCCCTTTGATACAGCTTCTGGTGGAGTATGGAGCGCGCTTTGATGTCCTGGATGACAGCGGTAACTCACCGGAAACAATCCTTCAGTCATTGGTGACGCGATATGGAAACGGACCAAATATGGAAATGTCTCGATCTTATCAGCAGTTACTACAGTTATTATGGGATAGCAACGAGAAACCTATAAGCTTGAAGCGTCTTTGTCGTTTGGCGATCCGGAAGCTTCTTTCGCCCTGCACCCACGAACTGGTTCACAGCCTGAGCGTTCCTTACTGCCTCGAATTGTACATTCTACACATCGTGCAGCATAACAACAAAGGCGATAAGATAATGTGAAAATGGCATCAATTTTATTTCCACTAATATATCTGTTCAATGAATTTGTTCTATTTACATCACTCTTATTATTGTTGTTTATAAGGAAATGCAATGtatggagtgtgttcgctcatgtgaccagaagccatatttgcataatgaaacaaaaggagagatttgcataaaaatagagtttaatccccaaaagaatatttcactcctccaacatggccgccgtttctttgtttactcttccaacatggccgccttcacgtcatatgaacacactcAGTATTCACCGAAGTGAAAGTGATTCTGCGGTGTGTTTTTAGCAATGCGCGCAGCATCGAGCTAAATATAAACACGACTTTCATTGCGATGAATGGTTGTTTAGTTTCATATACCATACAAGTTTAATAACTTTGTATGAAGTAACTAAATTAAATAACTGCTAGGTTGAAACTTAATTTACCAAAAATAGTAGGACTGCGAAGTATCAGTAACATTTGAGTGCCTTCGTTTGCTCTGAGGTAATGTAAGAAGAAACATTGACCGTGTTGGTATGCTTGTGAACTATTCGTTCTATGAATATAGCCAGCAGTGAGAAATTTAAGGGCTTTTCATTTTTTCTTTTGCGCTACATAAGTGGAATTTCGTCTTATTTTTAACTCTGGGCAGATGAGAAAAATTGTACCGTAGAACTCCGTTGTTACTGATATTGAGGGTGCCTTTGGTAGTGTCTGTTAATGGGTGTCCGTTTGAGGGGTGTTTGTATTTCGCGGGTCATGTTAGGTAAATCAAAAGTACGAATGCTATTAAAGAAAAAATAACAAGAAGTTAAAAAGAGAACCAAGAAACTAAACGTCTTTAAAAATAAGCTGCCAGCAAAAAAGCACCTAACAAAAGATGTTCAAGTAACGATTAGGTGAACATTTTTTTTTTTGCTGTTTTGATCAATTTAGCCCTTGACACAGTTATGGAATTGTGGAAAACGAGTTATGACCAGATTCCTTCACCTTCTGCCTGCCACCACGTCTAGGTTTTCGATCAGGAATTCTTTTATTTGATTGGTGACCATACCACGCTACGTCTAATGTTTTCTTCAAAGTGACAAGAGACGCTTTTCGTTTCTAAGGAAACGAAACAACAAAGGACGAAAAGAGGA

Protein

Gene family

Gene family	Subfamily
Ubiquitin Family	E3\|E3 adaptor Cullin RING\|SOCS

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF07525	SOCS_box	SOCS box	Domain	Interproscan
PF12796	Ank_2	Ankyrin repeats (3 copies)	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036770	Homologous_superfamily	Ankyrin repeat-containing domain superfamily	Interproscan
IPR001496	Domain	SOCS box domain	Interproscan
IPR002110	Repeat	Ankyrin repeat	Interproscan
IPR036036	Homologous_superfamily	SOCS box-like domain superfamily	Interproscan
IPR050663	Family	Ankyrin Repeat and SOCS Box	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24193	ANKYRIN REPEAT PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0035556	Biological Process	intracellular signal transduction	Interproscan
GO:0000976	Molecular Function	transcription cis-regulatory region binding	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0045944	Biological Process	positive regulation of transcription by RNA polymerase II	Interproscan