Gene detail

Detailed information of aech_s0023.g140.t2 in Acropora echinata

Genomic Location: sc0000023_pilon:2218474...2229030
NR annotation: XP_029189736.1, cytosolic Fe-S cluster assembly factor NUBP2 homolog [Acropora millepora]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

aech_s0023.g140.t2

TTTCTTTTTCTCAATTTTATTGCAACCACAGGCACTTTCGCGAGCGTTTGTTTGTTTGCAGGTTTTTATGAGCCAGCTGTAAACACAAATCCGTCCAGCAGGTTGTTTAACATTCAAGATGGCGGACGGAAAGTCTGAGCAAAGTCTGGAAAAGGTGCTTAAAAATATCAAACATATCATTCTGGTTTTATCTGGCAAAGGAGGCGTTGGCAAGAGTACTGTGACAACACAAATTGCGTGGACTCTGTACAACAAAGGAAAAAAGGTGGGAATATTAGATGTTGACTTATGTGGACCCAGTATTCCAAGAATGATGAACGTCGAAGGACAAGATGTACACCAGTGTTCCGCAGGTTGGGTTCCTGTTTACACTGATAAGGATCAAAGATTAGCTATCATGTCAATAGGTTTTTTGTTAGATAGCCGTGATGATGCAGTTGGTGTTGCAGTGTCTGATGTAAGAAGAGAGCTGTCTTTCTGCCAGAAAACTAAGATCCCAATCCTTGGTGTTGTGGAAAATATGAGTGGATTTGCTTGTCCTCATTGTGGTGAGTGCTCAAATGTGTTTTCAAAAGGCGGTGGAGAATCCCTCGCCGGAAGCTGTAGGGTTCCATTTTTAGGTTCCATCCCTTTAGATCCAAGTTTAGCTCAATCGTTAGAGGATGGTCAAGCATTTACAGATCTATTCCCCAATTCACCAACCCTCGATGCGGTGAACAAAATAACGTCTAAACTCTTAGAAATGAAAAACGGTGTTACTGATTGACTTGAAATGAAGGGAGGAGACATTTCTTTCGCTTGACTATTTCTGGCTCAAGCTCTTAAGACAAACCCTAGAAGCCCggctaatcttaggtgtaagatcctgtcaaacccacggatgacgtaaaacaaagaaaacaatgaaaagtgccaagagaccattgaagaataaccaaaattcggcgcgagctgacgtcgaaatgatgtcacaggttcttacaccgaggtaaacccAGAGGCCCCATGGGAATGAAGAGGTTGTAAATCCAGGCTGATTAGCATtagggagcttaagcaagggcgaacgacgacggcaacgaggacgccagaaaacaaatatctgattggttgaatgagaaaaaaatgatcgtgctgcacgtgcagcacgcactttaattaaattctttgacgtagtctgccaaatgacaacgtcaaattttcaaacttcaggttttaacgacaacgtgaacacattaaatctttcgttctctatatttacttcaacggcgcttctaccagtccatttgcacgtgctcccgcaatcaacaataaaggatgctaggaagaagtaataatcacaaaatagttaccatttctcaaatgtttattttcaagtgaccttttcgttgcgttgccttcgctgctgtttaagctccccattTTGTTGGTTAAGGACTGCACAGCATTGGTTTGAAAAAAAAAAAGTTTTCCATGGGAAAAAAAATGATAATAATGATTTTAATTCAAATAAATCGCGGAAATGAAAGGAAGAGGTTTGTTAACCCATACAACAGGCGTTATTGGGGCACACGTTGGAAAATTGTTTCTTATTCTCTCGCCGCCGCCTGTCTCGCGCTTAGCGCCAAAAGTCCAATGAGTGCACCAACCAAACTTGCGAAGGCTAACGATCTGTTGTTAAGCACACAGTCACTGCCAAAAACCAACAAGATCATAGACACGCCAGGGCACGTAAAAGAACTTTGTCTTTCAAAACAAACAAGTTTCTAAGCGACCTTCATACTGGTTTACACTATACTTAAGAAAATGTTTGTAACGAACATCGGGAATGCATGGCCTATTGGCGATTAGCGTCACTTGAAAATGGAAGTCTAGGTAATTTTAATCACTTGACTGCAGCTGTTTAATCTCTGTCGTAATATAAGATGTATAAAATGGATGTCCAGGGCGTGAATTATTCATATGAACGCTGTCGAGTTGCAGTGATTAAAAAAAATTGAATGTG

Protein

Uniprot

Uniprot term	Description
A7SE07	Cytosolic Fe-S cluster assembly factor NUBP2 homolog OS=Nematostella vectensis OX=45351 GN=v1g229988 PE=3 SV=1
A4QNM5	Cytosolic Fe-S cluster assembly factor nubp2 OS=Xenopus tropicalis OX=8364 GN=nubp2 PE=2 SV=2
Q5ZKV4	Cytosolic Fe-S cluster assembly factor NUBP2 OS=Gallus gallus OX=9031 GN=NUBP2 PE=2 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF10609	ParA	NUBPL iron-transfer P-loop NTPase	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR019591	Family	Mrp/NBP35 ATP-binding protein	Interproscan
IPR033756	Family	Flagellum site-determining protein YlxH/ Fe-S cluster assembling factor NBP35	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23264	NUCLEOTIDE-BINDING PROTEIN NBP35 YEAST -RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005524	Molecular Function	ATP binding	Interproscan
GO:0016226	Biological Process	iron-sulfur cluster assembly	Interproscan
GO:0051536	Molecular Function	iron-sulfur cluster binding	Interproscan
GO:0140663	Molecular Function	ATP-dependent FeS chaperone activity	Interproscan
GO:0005829	Cellular Component	cytosol	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K03593	mrp, NUBPL; ATP-binding protein involved in chromosome partitioning	-	Mitochondrial biogenesis	ko03029	deepkoala