Gene detail

Detailed information of aech_s0024.g38.t4 in Acropora echinata

Genomic Location: sc0000024_pilon:760135...783546
NR annotation: XP_015751563.1, PREDICTED: protein argonaute-2-like isoform X1 [Acropora digitifera]

Gene Structure

More details in Jbrowse

Sequence

CDS

aech_s0024.g38.t4

ATGCCAAGGAAACCGAAGGGAAGAGGTAATCGTGGCAGAGGTAGAGGAAACAACGGGCAAGATCATCAGCAACCGCGGCCAGGAAGAAGCGAAAATGGCATAGCTGCCATAGTTTCGGATCGTGAGGAAAAAAAACAAAACTTAGACGGAGAGGGTAGCGAAGGAACAGTCAAGGAAACTGCTGCCCCGAGCCAAAGAACATCTCGAAGTCAGGAATCTGCTGACAAGGCGGATTCTAAAGAACACAAGTGTGAAGAGAAGAATGCGATCTCTTCGAAACGATCGCAAGATGAGAGGCCAGGGCCGAGTGAAATTTCTCTCAGACCAGAGACAGCTCGTTTTGTTAAGCCAGTTGGGAACGCAGAGAATTGTGAACAGACGCGAAAATTATGCCCTGTATCTGATGAAGGAAAGACAGTACCTACTCAAAGCTGTGGCAGTGTGCCTTCAGGCGCAGGGGATACACAAGAAGCTACTAATTTGGCTCGAAAACTGGGCTCCAGCTTATCAATGCAAGACAGTCAAGCCAGGAGCAGTAGCAGTAGCAGTGTCCGCCCCCCTAAAAGACCAGGCTTTGGCACTGTTGGACGGCCTATAGCCCTTAAAGCCAACTTTTTCCGCCTAAGTTTCTCGCCAAAGCTAACTTGTCTTTACCATTACGATGTTGAGATAACTCCAAACAAGTGTCCCAAGGCTGTTAAAAGAGATGTTGTAAATGCTATTGTACGGAATAACAGAGCTACCTTCAGAAGTCATGAGCCAGGATTTGATGGGGAGAAAAATTTAATAAGCTTCATACAACTTCCCTCACCAGTTCAACTCAAGGTTACATTACCCGGTGTGGATGGTGGAAAGGACAGACAATTTGAGTTGAAACTCTTAAAAATTCCCACCAGGAGTGATAACTTTCAGATTAAATTTCTAGTGTCTGCAAAAGGATTTTATACAAGACAACCCGTAACCGACTTTGTCTGTGAAACACTAAATATGTCATACCGTGATCTTGACGACACAAGGGTCCGTATCGACAAAGAGAAACTCAAGAAAGCTATAAGTGGTGTTCGTATAGAAACAACACATACGAGGCGGAAGTACACAGTTTGGGGAATGTCAAACCAATCTGCTGAAAAATTACAATTTGAAATTGAAGACGAGGCATCAAAGCTAACTACCAAAATAACTGTGGCCAGATACTTTCTTGACACATACGGGTTAGAGTTAAGATATCCTCATCTTCCCTGTCTCCAAGTTGGCCAGGAAAAAGACCGTTTCCTTCCCATGGAGGTCTGTGCCATCATTCCTTGCCAAAAGAGGCACTTGTCTAAACAACAAATTGCAAATATGATCAGGAGTACGGCACGCCCTGCGCCAGAACAACAGGGGGAAATTCAACTTTGGCTTGGTCCCCAAGATAAAGGACTGACCCCAGGTGATGGCTCTTGGGACATGCGCAATCAAGCCGTTGTTAAAAGCGCAAGAGTCGATATGTGGGCTTTGGTCTGTTTTGCTTCTTGCAATGAGGATCCGCTAAGAAACTTTTGTCATCAAGTCTCCAGTGTGTCAAATCGTGAAGGAATGACTATGGCTGCACAGCCAGCCTTAATTACCTTTGGAAGAGGACCTGAAGAAGAAAGATTTAGTTTTTTGTTCCATTGTAGTTCCTTGGTTGAGCGATTGTTCTTTGACTGTTTGGAGCAATTTCCAGCACTTCAACTCATCATGGTTGTCCTTCCAGTTTTCGATAAAATACTCTACTCCGAAGTGAAACGCGTTGGCGATAGCGTGATCGGCATTCCGACACAGTGCGTTCAGATGAAACATGTGCAGCAGGCCAAACCTCAAGTGTGTGCTAACATCTCGCGTGATATCAATGCCAAACTTGGAGGAACCAATCATGTTCTTGACGATTCTGTTAAACTAGCCTTCAATGAACCTACTATCGTGTTTGGTGCCCATGTGACCCACTCCTCCCCAACAGAAAATGGCATTCCCTCCATTGCTGCGGTGGTGGCAAGTATGGATTATCATGCCTCGGAATATCACGCACGCGTCCGCGTGCAGAAGCACGAGAACGGTGGAGGTTCTCAGGCGATCATCACTGACCTCGCAGAGATTGTAAAAGAACTCCTCATCGAATTTATCAAAACTAATGGGTCCCGTAAGCCGTCTAAGATCTTGTTTTACCGTGATGGTGTCAGCGAGGGGCAGTTTGATCAAGTTCTTGTTCACGAAGTGCGCGCTGTGCAAGAAGCTTGTAGGAAACTTGAAAAGGACTATCGACCGAGCATCACGTTTGTCGTTGTACGACAGAAACGACATCGCACTAGATTGTTTTCTGAAAACGGAAAAGAGGCTTCTGCGAATGCACCTACTGCCCCACCAGAAACAACTGTGGACAGTGGGATTACTCGTCCATACGAATTCGATTTCTCAGTGTGCAGCCACGACAAAATTCAGGGAACAAGTCGACCAACTCATTATCGTGTCTTATATGACGACAATAATTTTACCGCAGCCAGCATGGAACAACTCACTTACGAGCTGTGCCAAGTTTATGCCAGGTGCACGCGGAGTGCGTCCATGCCAGCCCCTGCGCACTACGCACATTTGGCAGCTTCTCGTGCTCGAGTCCTTGTGATCAATGGAAATAGCTCCGGATCTGCTGGTTTGGAAGAGTGTACAAGAGCTATTCAAGTCAACGAAAAAATGAAAAGTTCCATGTACTTCACCTGA

Transcript

aech_s0024.g38.t4

ATTTATTTTTGACTACGTCATGATTATTTCCACACAGTTTACGTTTTTCGTTGCGAACGTGGGAATCGCTTGTGCACAACTCAAGATTTTACACAAATTTTAAAGCTGTCCTTCGAAAAGGACGTACTCCATTGTAGTAGAAATGCCAAGGAAACCGAAGGGAAGAGGTAATCGTGGCAGAGGTAGAGGAAACAACGGGCAAGATCATCAGCAACCGCGGCCAGGAAGAAGCGAAAATGGCATAGCTGCCATAGTTTCGGATCGTGAGGAAAAAAAACAAAACTTAGACGGAGAGGGTAGCGAAGGAACAGTCAAGGAAACTGCTGCCCCGAGCCAAAGAACATCTCGAAGTCAGGAATCTGCTGACAAGGCGGATTCTAAAGAACACAAGTGTGAAGAGAAGAATGCGATCTCTTCGAAACGATCGCAAGATGAGAGGCCAGGGCCGAGTGAAATTTCTCTCAGACCAGAGACAGCTCGTTTTGTTAAGCCAGTTGGGAACGCAGAGAATTGTGAACAGACGCGAAAATTATGCCCTGTATCTGATGAAGGAAAGACAGTACCTACTCAAAGCTGTGGCAGTGTGCCTTCAGGCGCAGGGGATACACAAGAAGCTACTAATTTGGCTCGAAAACTGGGCTCCAGCTTATCAATGCAAGACAGTCAAGCCAGGAGCAGTAGCAGTAGCAGTGTCCGCCCCCCTAAAAGACCAGGCTTTGGCACTGTTGGACGGCCTATAGCCCTTAAAGCCAACTTTTTCCGCCTAAGTTTCTCGCCAAAGCTAACTTGTCTTTACCATTACGATGTTGAGATAACTCCAAACAAGTGTCCCAAGGCTGTTAAAAGAGATGTTGTAAATGCTATTGTACGGAATAACAGAGCTACCTTCAGAAGTCATGAGCCAGGATTTGATGGGGAGAAAAATTTAATAAGCTTCATACAACTTCCCTCACCAGTTCAACTCAAGGTTACATTACCCGGTGTGGATGGTGGAAAGGACAGACAATTTGAGTTGAAACTCTTAAAAATTCCCACCAGGAGTGATAACTTTCAGATTAAATTTCTAGTGTCTGCAAAAGGATTTTATACAAGACAACCCGTAACCGACTTTGTCTGTGAAACACTAAATATGTCATACCGTGATCTTGACGACACAAGGGTCCGTATCGACAAAGAGAAACTCAAGAAAGCTATAAGTGGTGTTCGTATAGAAACAACACATACGAGGCGGAAGTACACAGTTTGGGGAATGTCAAACCAATCTGCTGAAAAATTACAATTTGAAATTGAAGACGAGGCATCAAAGCTAACTACCAAAATAACTGTGGCCAGATACTTTCTTGACACATACGGGTTAGAGTTAAGATATCCTCATCTTCCCTGTCTCCAAGTTGGCCAGGAAAAAGACCGTTTCCTTCCCATGGAGGTCTGTGCCATCATTCCTTGCCAAAAGAGGCACTTGTCTAAACAACAAATTGCAAATATGATCAGGAGTACGGCACGCCCTGCGCCAGAACAACAGGGGGAAATTCAACTTTGGCTTGGTCCCCAAGATAAAGGACTGACCCCAGGTGATGGCTCTTGGGACATGCGCAATCAAGCCGTTGTTAAAAGCGCAAGAGTCGATATGTGGGCTTTGGTCTGTTTTGCTTCTTGCAATGAGGATCCGCTAAGAAACTTTTGTCATCAAGTCTCCAGTGTGTCAAATCGTGAAGGAATGACTATGGCTGCACAGCCAGCCTTAATTACCTTTGGAAGAGGACCTGAAGAAGAAAGATTTAGTTTTTTGTTCCATTGTAGTTCCTTGGTTGAGCGATTGTTCTTTGACTGTTTGGAGCAATTTCCAGCACTTCAACTCATCATGGTTGTCCTTCCAGTTTTCGATAAAATACTCTACTCCGAAGTGAAACGCGTTGGCGATAGCGTGATCGGCATTCCGACACAGTGCGTTCAGATGAAACATGTGCAGCAGGCCAAACCTCAAGTGTGTGCTAACATCTCGCGTGATATCAATGCCAAACTTGGAGGAACCAATCATGTTCTTGACGATTCTGTTAAACTAGCCTTCAATGAACCTACTATCGTGTTTGGTGCCCATGTGACCCACTCCTCCCCAACAGAAAATGGCATTCCCTCCATTGCTGCGGTGGTGGCAAGTATGGATTATCATGCCTCGGAATATCACGCACGCGTCCGCGTGCAGAAGCACGAGAACGGTGGAGGTTCTCAGGCGATCATCACTGACCTCGCAGAGATTGTAAAAGAACTCCTCATCGAATTTATCAAAACTAATGGGTCCCGTAAGCCGTCTAAGATCTTGTTTTACCGTGATGGTGTCAGCGAGGGGCAGTTTGATCAAGTTCTTGTTCACGAAGTGCGCGCTGTGCAAGAAGCTTGTAGGAAACTTGAAAAGGACTATCGACCGAGCATCACGTTTGTCGTTGTACGACAGAAACGACATCGCACTAGATTGTTTTCTGAAAACGGAAAAGAGGCTTCTGCGAATGCACCTACTGCCCCACCAGAAACAACTGTGGACAGTGGGATTACTCGTCCATACGAATTCGATTTCTCAGTGTGCAGCCACGACAAAATTCAGGGAACAAGTCGACCAACTCATTATCGTGTCTTATATGACGACAATAATTTTACCGCAGCCAGCATGGAACAACTCACTTACGAGCTGTGCCAAGTTTATGCCAGGTGCACGCGGAGTGCGTCCATGCCAGCCCCTGCGCACTACGCACATTTGGCAGCTTCTCGTGCTCGAGTCCTTGTGATCAATGGAAATAGCTCCGGATCTGCTGGTTTGGAAGAGTGTACAAGAGCTATTCAAGTCAACGAAAAAATGAAAAGTTCCATGTACTTCACCTGAATGGAGCAGTCAAGTATCCCTTGGATGGGCTGGGAACAGTTCACATCTTCAACAAATTAATTACACCATAAAATGGTTAAAGTACAGCGGATCTACTAGCGCAGTGAAATATAAAAAAAACCGTCGTCAATACTCCCTCGACAAAATTTAACGTTGACCCTTTTGGTTTTACTCAAGTTTTTGGGGCTGTTTGTTTTTGTTTCCTTAGCCTCAGTAATGATTTCAACAATCTAGTTGATTCTATTCTAATCATATACTTTTTAACATTCTAGCTCCATTGCATTTCTACTAGCTCTGCCATTGATTTTGACCGTTGTTACACTATCAAACTACCGTCAGTCAAGTACTTATTAGAGGGAACACATCATTCAAAAGCCTTGTGGTTTCTCATGGGCGTCCTCGCCTCCTCCTCTTCCCTATAAGTATTTTGTGTTGCTCAGTTCCACTCTTTTTGGCAAAATTGAAAGAACTTCAAACTTGAATTAAATCCAATAGAAAGAG

Protein

Uniprot

Uniprot term	Description
Q8CJG0	Protein argonaute-2 OS=Mus musculus OX=10090 GN=Ago2 PE=1 SV=3
Q9UKV8	Protein argonaute-2 OS=Homo sapiens OX=9606 GN=AGO2 PE=1 SV=3
O77503	Protein argonaute-2 (Fragment) OS=Oryctolagus cuniculus OX=9986 GN=AGO2 PE=1 SV=2

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF16486	ArgoN	N-terminal domain of argonaute	Domain	Interproscan
PF16487	ArgoMid	Mid domain of argonaute	Domain	Interproscan
PF02170	PAZ	PAZ domain	Domain	Interproscan
PF02171	Piwi	Piwi domain	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR003100	Domain	PAZ domain	Interproscan
IPR036085	Homologous_superfamily	PAZ domain superfamily	Interproscan
IPR045246	Domain	Argonaute-like, PIWI domain	Interproscan
IPR003165	Domain	Piwi domain	Interproscan
IPR032474	Domain	Protein argonaute, N-terminal	Interproscan
IPR036397	Homologous_superfamily	Ribonuclease H superfamily	Interproscan
IPR012337	Homologous_superfamily	Ribonuclease H-like superfamily	Interproscan
IPR032473	Domain	Protein argonaute, Mid domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR22891	EUKARYOTIC TRANSLATION INITIATION FACTOR 2C	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0003727	Molecular Function	single-stranded RNA binding	Interproscan
GO:0004521	Molecular Function	RNA endonuclease activity	Interproscan
GO:0016246	Biological Process	regulatory ncRNA-mediated post-transcriptional gene silencing	Interproscan
GO:0035198	Molecular Function	miRNA binding	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0003676	Molecular Function	nucleic acid binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K11593	ELF2C, AGO; eukaryotic translation initiation factor 2C	-	Chromosome and associated proteins	ko03036	deepkoala