Gene detail

Detailed information of aech_s0026.g2.t2 in Acropora echinata

Genomic Location: sc0000026_pilon:69992...79413
NR annotation: XP_044166775.1, NLR family CARD domain-containing protein 3-like, partial [Acropora millepora]
Species abbreviation AECHI · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

aech_s0026.g2.t2

atggcatcgtgttcaaggcagcctaaagaacatgatagaaccattaaagtaacaattttggcttctgagtggggatccagtaagggtggactttccactataagcagagagttggctattcagttggcaaaatttcctaatgttgaagtcactgtctttttgccaaaatgttttgacgggaataaggcagaagcgctcagccatggcatagccattgttgaggcagagagacgaccagggtacgaagaacttgactggcttagctttccaccggaagagttagagatggatgtggttgttggtcatggtgtgaaaatcggtaaacaggctcaagttatccgcaaatctcacaaatgcaagtgggttcaagtggtacacacagatccagagaaactagaaatgtacaaatgttatgagaatccaatctcaaagggagaacaaaagcacattgctgaggtagaactatgccagatgtctgatttggttgttgcagtcggaccgaagttagcagaagcctttcgcaagtaccttcgttggtgtgaaagagatcaaaatgtttctgagttcactcctggtgtttttgctgatttttccagtgttaaacaagctcttgatgaaagaaatgaccacagtgttttgatctttgggcgtggagatgatgaagattttaagctaaagggttttgatattgcagcaagatctgttgctgtattacctgacacacatctggtatttgtgggagcacccgaaggaaaacactctgatgtcacaaaacgtttgcttgattccggaatttctgaaagacgtcttactgtgcgtggcttcaaggatcgagaagctctgaagcgagaattctgtgaggcagatcttgtgctaatgccatccagaactgaagggtttggcttgacagctctggaagcaatgtcagctggacttcctgtaatcgtcagcaagaactcagggtttggagaagctctgggccgtgtaccatttggctcttcatttgtgattgactctgaagatccaagtgcatggacagcagctatcaagcgcacctgggacaaagacagacggacacgacttgatgagatcaaggttctgcttgacgcctatggaaagagatacagttggtcagaacagtgcaaaaatcttcttgataagatggtcagcctacttgtgaatagacaagATGCTTTTGGCAGGAGTCAGATCTCAGTCCAGGAAGGTGTGGAGAGGAGAAGCACATCCATTGAAGACAGAACAGgagatccaagccacgtcataaagttgatacaacaaatttacgtaaagtgtgaaggggtgattttgccagttccttggtgtgacagattcagctttcagctcgagaaaatttttaccagacttaggatagttgcaaaagaaaagacacgcgaaaacgtcacgaaagaagtgacgagcatgtcaagtatctttacaccacacgaagattgtcaacgaccaatggttgtgttgattgaaggcgagcctggcattggaaaaacgacctactgccagaagctagcatatgattgggcaactagacatggtcgcgaatggcatgagtcttttccaagaattgaagtgcttctgctcctcagatgtcgtgaaattgaatctaactatttatggaaagcaattgaggatcaaattttacccgagggcattgaaccagaggtaagaaaaacgtttatccagttcctccaagaaaatccttccaaggtgttgttggtgctcgatgggttagatgaggcagacccagagaaactgaaactcttccgtaaactgattcaaggaaagctgctccctggttgtttcgttgttcttacatctcgccatgaagctggaagtaacataatgccgcacaccgacactttgttggaaatcgtgggattcacgacaactgatgcggattgtttcataagaaggtactttcaacaatcacacaatcaacacttggcagcgacactcattgcaaaactggagtcatataatttatatgaattaacgagaaaccctctaaatactctcctactctgtgttatctttgaggatcttaacgggcttctgccaaagagcagaacaaagctttacatagagatggtcctctttgttttgagacgttatgaaaacaagaatggcttttcgagtagtaataaagacctccttttagtttacaagaaggaattgatgatccttggcagagtggcgctagattcgctgagaaaaggagagctgtattttgaagaccatcaaggcgatttcgagcaaagtttgtttcctaaattaggctttttgtccatccaggctggaggtggcaagagagcaccttgtcctcgttacgcattttttcacaaaagttttcaagaatttttttccgcctttttccttgccttttctattattgatggtacaatggactgcaagtcagtggctaacaaagaatacgaagaggaactaagtgaagtgttcacatttatgggcggaatcattgccatgcattctgaagcaactgctgtgtcaattgtaaaaagcattgtatcagttgtaaatgtgtcagaccgcaaatcccgtgacaatcggacgtacgtgagactggctttaagctttacaagcgaatccgaacttttttcaaaaaacctttacacagaattagcttatttatttggcaagagacttgagcttgtgCACTTGAAGGAGCGCTTGCTTTCCCAACGACAATTCAGTACGCTATTCTTGGCCTTAAGAGTAAACACCTCTCTTACTTCGTTGACATTGTTTGAGAACTCCGTTGGTGATGAGGGAGCTCATTCCCTATCTGGGGCCCTAAGAGTAAACACCTCTCTTACTTCTTTGAGTTTGTCTCATACCTTGATCGGTGATGAGGGAGCTCATTCCCTATCTGAGGCCTTAAGAGTAAACACCTCTCTTACTTCTTTGCATTTGAGTGGGAACTCTATTGGTGATGAGGGAGCCAATTCCATATCTGAGGCCTTAAGAGTTAACGCCTCTCTTACTTCTTTGGATTTGTCTGACAACTTGATTAAAAACGAGGGAGCTAATTTCCTATCTGAGGCCTTAAGAGTAAACACCTCTCTTACTTCTTTGGATTTGCGTTTTAACTCTATTCATGCTGAGGGAGTTTATTCCGTATCTGAGGCCTTAAGAATAAACACCTCTCTTACTTCTTTGCATTTGGCTGTGACCTCCATTGGTGCTGAGGGAGCCAATTTCCTATCCGGGGCTTTAAGAGTAAACACCTCTCTTACTTCTTTGCATTTGGCTGTGAACTCCATTGGTGCTGAGGGAGCTAGTTCCCTTTCTGAGGTCTTAAGAGTAAACACCTCTCTTACTTCTTTGCATTTGGGTTTGAACTGCATTGGTGATGAGGGAGCCAATTTCCTATCTGAGGCCCTAAGAGTAAACTCCTCTCTTACTTCTTTGCATTTGGGTGTGAACTCCATTGGTGATGAGGGAGCCAATTTCCTATCTGAGGCCCTAAGAGTAAACACCTCTCTTACTTCTTTGGATTTGGATGGGAACTCCATTGGTGATGAGGGAGCCAATTTCCTATCTGAGGCCTTAAGAGTAAACGCCTCTCTTACTTCTTTGGATTTGGGTGGGAACTCCATTGGTGATGACGGAGCCAATTTCCTATCTGAGGCCCTAAGAGTAAACACCTCTCTTACTTCTTTGCATTTGTTTGGAAACTCCATTGGTGATGAGGGAGCCAATTTCCTATCGGAGGCCCTAAGAGTAAACACCTCTGTTACTTCTTTGGATTTGGGTGGGAACTCCATTGGTGCTGAGGGAGCTTGTTCCGTATCTGAGGCCTTAAGAGTAAACACCTCTCTTACTTCTTTGGATTTGCGTGCGAACTCCGTTGGTGATGAGGGAGCCAATTTCCTCTCTGAGGATTTAAGAGTAAACACCTCTCTTACTTCTTTGGATTTGCGTTTTAACTCCATCCATGCTGAGGGAGCTTATTCCGTATCTGAGGCCTTAAGAGTAAACACCTCTCTTACTTCTTTGCTTTTGGATGGGAACTCCATTGGTGATGAGGGAGCCAATTTCCTATCTGAGGCCTTAAGAGTAAACACCTCTCTTACTTCTTTGCGTTTGGGTGGGAACTCCATTGGTGATGATGGAGCCAATTTCCTATCTGAGGCCTTAAGAGTAAACACCTCTCTTACCTCTTTGGATTTGGGTGAGAACTCCATTGGTGATGAGGGAGCCAATTTCCTATCTGAGGATTTAAGAGTAAACACCTCTCCTACTTCTTTGGGTTTGAGGCAGAACCCCAAAGATGCTAAGAGGGCTATTTCCGCATCTCACGCGTTAAGAGTTAAGACCTCTCATCATCCTTAA

Transcript

aech_s0026.g2.t2

ggagcttctacacttttgctgaagatgccccttcattagctttgtctggttttctaattgacacgcttcctcatggcatcgtgttcaaggcagcctaaagaacatgatagaaccattaaagtaacaattttggcttctgagtggggatccagtaagggtggactttccactataagcagagagttggctattcagttggcaaaatttcctaatgttgaagtcactgtctttttgccaaaatgttttgacgggaataaggcagaagcgctcagccatggcatagccattgttgaggcagagagacgaccagggtacgaagaacttgactggcttagctttccaccggaagagttagagatggatgtggttgttggtcatggtgtgaaaatcggtaaacaggctcaagttatccgcaaatctcacaaatgcaagtgggttcaagtggtacacacagatccagagaaactagaaatgtacaaatgttatgagaatccaatctcaaagggagaacaaaagcacattgctgaggtagaactatgccagatgtctgatttggttgttgcagtcggaccgaagttagcagaagcctttcgcaagtaccttcgttggtgtgaaagagatcaaaatgtttctgagttcactcctggtgtttttgctgatttttccagtgttaaacaagctcttgatgaaagaaatgaccacagtgttttgatctttgggcgtggagatgatgaagattttaagctaaagggttttgatattgcagcaagatctgttgctgtattacctgacacacatctggtatttgtgggagcacccgaaggaaaacactctgatgtcacaaaacgtttgcttgattccggaatttctgaaagacgtcttactgtgcgtggcttcaaggatcgagaagctctgaagcgagaattctgtgaggcagatcttgtgctaatgccatccagaactgaagggtttggcttgacagctctggaagcaatgtcagctggacttcctgtaatcgtcagcaagaactcagggtttggagaagctctgggccgtgtaccatttggctcttcatttgtgattgactctgaagatccaagtgcatggacagcagctatcaagcgcacctgggacaaagacagacggacacgacttgatgagatcaaggttctgcttgacgcctatggaaagagatacagttggtcagaacagtgcaaaaatcttcttgataagatggtcagcctacttgtgaatagacaagATGCTTTTGGCAGGAGTCAGATCTCAGTCCAGGAAGGTGTGGAGAGGAGAAGCACATCCATTGAAGACAGAACAGgagatccaagccacgtcataaagttgatacaacaaatttacgtaaagtgtgaaggggtgattttgccagttccttggtgtgacagattcagctttcagctcgagaaaatttttaccagacttaggatagttgcaaaagaaaagacacgcgaaaacgtcacgaaagaagtgacgagcatgtcaagtatctttacaccacacgaagattgtcaacgaccaatggttgtgttgattgaaggcgagcctggcattggaaaaacgacctactgccagaagctagcatatgattgggcaactagacatggtcgcgaatggcatgagtcttttccaagaattgaagtgcttctgctcctcagatgtcgtgaaattgaatctaactatttatggaaagcaattgaggatcaaattttacccgagggcattgaaccagaggtaagaaaaacgtttatccagttcctccaagaaaatccttccaaggtgttgttggtgctcgatgggttagatgaggcagacccagagaaactgaaactcttccgtaaactgattcaaggaaagctgctccctggttgtttcgttgttcttacatctcgccatgaagctggaagtaacataatgccgcacaccgacactttgttggaaatcgtgggattcacgacaactgatgcggattgtttcataagaaggtactttcaacaatcacacaatcaacacttggcagcgacactcattgcaaaactggagtcatataatttatatgaattaacgagaaaccctctaaatactctcctactctgtgttatctttgaggatcttaacgggcttctgccaaagagcagaacaaagctttacatagagatggtcctctttgttttgagacgttatgaaaacaagaatggcttttcgagtagtaataaagacctccttttagtttacaagaaggaattgatgatccttggcagagtggcgctagattcgctgagaaaaggagagctgtattttgaagaccatcaaggcgatttcgagcaaagtttgtttcctaaattaggctttttgtccatccaggctggaggtggcaagagagcaccttgtcctcgttacgcattttttcacaaaagttttcaagaatttttttccgcctttttccttgccttttctattattgatggtacaatggactgcaagtcagtggctaacaaagaatacgaagaggaactaagtgaagtgttcacatttatgggcggaatcattgccatgcattctgaagcaactgctgtgtcaattgtaaaaagcattgtatcagttgtaaatgtgtcagaccgcaaatcccgtgacaatcggacgtacgtgagactggctttaagctttacaagcgaatccgaacttttttcaaaaaacctttacacagaattagcttatttatttggcaagagacttgagcttgtgCACTTGAAGGAGCGCTTGCTTTCCCAACGACAATTCAGTACGCTATTCTTGGCCTTAAGAGTAAACACCTCTCTTACTTCGTTGACATTGTTTGAGAACTCCGTTGGTGATGAGGGAGCTCATTCCCTATCTGGGGCCCTAAGAGTAAACACCTCTCTTACTTCTTTGAGTTTGTCTCATACCTTGATCGGTGATGAGGGAGCTCATTCCCTATCTGAGGCCTTAAGAGTAAACACCTCTCTTACTTCTTTGCATTTGAGTGGGAACTCTATTGGTGATGAGGGAGCCAATTCCATATCTGAGGCCTTAAGAGTTAACGCCTCTCTTACTTCTTTGGATTTGTCTGACAACTTGATTAAAAACGAGGGAGCTAATTTCCTATCTGAGGCCTTAAGAGTAAACACCTCTCTTACTTCTTTGGATTTGCGTTTTAACTCTATTCATGCTGAGGGAGTTTATTCCGTATCTGAGGCCTTAAGAATAAACACCTCTCTTACTTCTTTGCATTTGGCTGTGACCTCCATTGGTGCTGAGGGAGCCAATTTCCTATCCGGGGCTTTAAGAGTAAACACCTCTCTTACTTCTTTGCATTTGGCTGTGAACTCCATTGGTGCTGAGGGAGCTAGTTCCCTTTCTGAGGTCTTAAGAGTAAACACCTCTCTTACTTCTTTGCATTTGGGTTTGAACTGCATTGGTGATGAGGGAGCCAATTTCCTATCTGAGGCCCTAAGAGTAAACTCCTCTCTTACTTCTTTGCATTTGGGTGTGAACTCCATTGGTGATGAGGGAGCCAATTTCCTATCTGAGGCCCTAAGAGTAAACACCTCTCTTACTTCTTTGGATTTGGATGGGAACTCCATTGGTGATGAGGGAGCCAATTTCCTATCTGAGGCCTTAAGAGTAAACGCCTCTCTTACTTCTTTGGATTTGGGTGGGAACTCCATTGGTGATGACGGAGCCAATTTCCTATCTGAGGCCCTAAGAGTAAACACCTCTCTTACTTCTTTGCATTTGTTTGGAAACTCCATTGGTGATGAGGGAGCCAATTTCCTATCGGAGGCCCTAAGAGTAAACACCTCTGTTACTTCTTTGGATTTGGGTGGGAACTCCATTGGTGCTGAGGGAGCTTGTTCCGTATCTGAGGCCTTAAGAGTAAACACCTCTCTTACTTCTTTGGATTTGCGTGCGAACTCCGTTGGTGATGAGGGAGCCAATTTCCTCTCTGAGGATTTAAGAGTAAACACCTCTCTTACTTCTTTGGATTTGCGTTTTAACTCCATCCATGCTGAGGGAGCTTATTCCGTATCTGAGGCCTTAAGAGTAAACACCTCTCTTACTTCTTTGCTTTTGGATGGGAACTCCATTGGTGATGAGGGAGCCAATTTCCTATCTGAGGCCTTAAGAGTAAACACCTCTCTTACTTCTTTGCGTTTGGGTGGGAACTCCATTGGTGATGATGGAGCCAATTTCCTATCTGAGGCCTTAAGAGTAAACACCTCTCTTACCTCTTTGGATTTGGGTGAGAACTCCATTGGTGATGAGGGAGCCAATTTCCTATCTGAGGATTTAAGAGTAAACACCTCTCCTACTTCTTTGGGTTTGAGGCAGAACCCCAAAGATGCTAAGAGGGCTATTTCCGCATCTCACGCGTTAAGAGTTAAGACCTCTCATCATCCTTAAGATTTGTTTTCGAGGGTTACACGTAAAGATGAATTACAGTTAACAGTTAAATTTATATTTGGACACGAATACGGTGAAGATCCATAGATAGGGTGCTCTCGAACTTAACGCGACAGAAGAGCTTATTTTTATTTTTAATCGAGGTGCGTGGTGTAGCACATGTCATTGTCATCGTTTGGATCAAACCGAGTTCCTTTCCCAAAGATAACTCAATTGAAATTCAAGAAATTTCTGCTAAAATTATATTTTAAAGAGGAGGGTCAAAAGTGTTGTCAGTTTTCCATACAAATTGTACTTTGTATGACGCATCAGTTGGAAAGTGGGTAATCGCTAACAGGCAATGAAGAATAACCGTAGTATGAATTTTCAGTTGCACGTTTAAAATCCCAGGAATGACGTGATTTCAGGCCCAAGTCAAGTCTGACACCTAACGCAAATTGTATGGAAAATATTTTTGAGGGGTAAAAGCAACGTTCTAACTAATGCAGGCTTTGATAAGGCTTTGAACTGATGAGTCGTGAAGATCAGAATGAATATCTAAAATTCAG

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
C3VPR6	Protein NLRC5 OS=Mus musculus OX=10090 GN=Nlrc5 PE=1 SV=2
D5UJ42	D-inositol 3-phosphate glycosyltransferase OS=Cellulomonas flavigena (strain ATCC 482 / DSM 20109 / BCRC 11376 / JCM 18109 / NBRC 3775 / NCIMB 8073 / NRS 134) OX=446466 GN=mshA PE=3 SV=1
D1BD84	D-inositol 3-phosphate glycosyltransferase OS=Sanguibacter keddieii (strain ATCC 51767 / DSM 10542 / NCFB 3025 / ST-74) OX=446469 GN=mshA PE=3 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000025 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF20706 all species →	GT4-conflict	Family 4 Glycosyltransferase in conflict systems	Family	Interproscan
PF13516 all species →	LRR_6	Leucine Rich repeat	Repeat	Interproscan
PF05729 all species →	NACHT	NACHT domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR052201 all species →	Family	Leucine-rich repeat-containing regulator of pluripotency	Interproscan
IPR007111 all species →	Domain	NACHT nucleoside triphosphatase	Interproscan
IPR032675 all species →	Homologous_superfamily	Leucine-rich repeat domain superfamily	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR003593 all species →	Domain	AAA+ ATPase domain	Interproscan
IPR001611 all species →	Repeat	Leucine-rich repeat	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24111 all species →	LEUCINE-RICH REPEAT-CONTAINING PROTEIN 34	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0016887 all species →	Molecular Function	ATP hydrolysis activity	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for aech_s0026.g2.t2.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.