Gene detail

Detailed information of aech_s0029.g18.t1 in Acropora echinata

Genomic Location: sc0000029_pilon:387826...391053
NR annotation: XP_044164518.1, putative leucine-rich repeat-containing protein DDB_G0281931 [Acropora millepora]

Gene Structure

More details in Jbrowse

Sequence

CDS

aech_s0029.g18.t1

ATGGGTGCACACCATTGCTCCTGGTATGGCGTGACTTGTCATACAAACACATCACATGTAAAGACACTTGCGCTCCCTTACAACAACCTCAATAGGTCCCTTCCATCCAACATATGGAAGATCCGTAACTTATTCTCCCTTTGTGTACCTGGAAATCCTGGTCTCCATGGAAACATTCAAGACCTTCTATTTGGAAATATGAGTAATTTGTTGACTGTTGTACTACGCGGATCCTCGTTGACGGGGAAGATTCCTGATGACTTTGTCAAACTGACACATCTGCAGAACTTTTTCGGAGGCATCATGAATGGCCCAGGATTCTCTGGTCACCTGCCAGACGACATTGGAAACATGACAGACCTGCGACGTCTTTCCATTCCAGGAAATAACTTTACTGGAAAAATACCGACAAGCATCTCTCGATTGAAAGGGCTAGGCCATCTTAACCTCCGAAATAATCCTGGCATGATGCACGGAAACCTGGATGACTTATTTGCGATTAGCTCATTGAAAATCTTGTACGTATCCGGAGTTCATCTGAGTGGAAAATTACCCCATGTATTTCCAGAAAATTTAGCGCAAATTTTCTTACCTAGCAACAACATATCAGGAGAGCTCCCGAGGGGTACCAAACCACCTTTCTTAAACCTTGCGAACAACCAGCTTACTGGGGATATCCCTGGCCATTGGCTAGTTTCGGGATCGAACAAATCGTTGTTAGACTTGTCACAGCACAAATTTTCATCAATCAACGAAGGAAAACCATGGCCTGATAACTCCACTGCTGGCGCTTTTTCATATCTTTCCTTCGCAGAAAATCGCAACTTGTCAATCAATTTCACGAGCTTTATGGGACTGTTTAAACCAACTAAACTTTATCTTGCTGGCCCATCAATTTTTAATGCAAGCCTTTGTGAAATCACAAGCCCACTTCCTGGAAATTTGTTTTCCATGCAAGAACTGAATATCTGTGATTTACATGGTAATAACTTTTACGGACCAGTCCCAAATTTTGCCGAGGATACCTCTTTGTTGACGTACCTTGATCTCTCATCGAATAATTTCACAGGTGCTCCTCCAAGTGCATTTCAAGACCTCGTTTCTCTACAGTATTTCGATATTTCCGGCAACCCTTTGATGCGAAACGAACACGACACTTCATTTTTGTTCATCCCTGACTTCTTACGGATGACAAAACCTCCCCATGGAGACAACTTTACATGTGCAGAAGGACGTCTTACGTTTAACAACGGACGCATACGTTTAGATCCAACATTTTACGACTACAAGTACTGCATCTGCGACCATGGTTACTATGGGGACAAAGGGCTGTGCCATAAATGTATGGAGGGAGGAATCTGCAATAGACCCACCATCAGCTCACCGGAAGAGCTAAAGGCTAACACGATGAAGATCTTAAAAGTGTGCTTGACATTAGTGGGTGTTTATTTCATTGTTATGCTAATTTATAATAGATATCGTCCCATCGAAAGACGCATGGAAAATGTTCACTTCAAATGTCGCCAAAGCGCTTTCTTTACTCTTAGCTTCAGCTACTTTCCAACTGTGCAACAGACACTTTCCAACTTACGTCCATGTCACAACGATCAGGGTGTTTTCTACATGCCAAACGAGCCATGGATAGAGTGCACCTCAGACACCTACTACAAGCTGAGAGCACTTGGCATTGTGTCTGTAATCTTCTATGTGGTTGGATTTCCTTTGATTGTCATCTTTCTTATGGTTCGCTTCCTTCCAAAGAGAAACTTGATGACTCCCGAAGATCGCAAGAAACTCGACGTGTGGCTTGGACCACTCTACTTACCCTACAAACCAAAGTACCAGCAGTACTTCGAGATCCTCATGCTTATTCACAGATTGATTCTTGCTGTAGCCTTGTCCATGATTTCGTCATCGACTCTGCAGACGTTTATTATTTGGCTCGTCCTCATGACGTCGGCTCTTATCCAAATATGTCTACAGCCGTATCAAAAACACCCTAGAAGTACTGGTTCACCAACTTTAAATGAGCAAGGGAAGCGCAAGATCACACTGGAACAAATTTTCAGTGAGAATGTGATGGAGCCCACAGTGTTACTTGTGCTTTCCATGTCCTTTATGGTGCTTAGGTTTTCGGTCCTGGACGAAAATTACGTCGGTGTTTTCGTTTGGCTGGTGATGATCATCAATGCAACAGTCTTTGTCACTCTTATAGGTGGCATCCGCTATCGCCTGGTTGTGCTGAAAGGTGGGAGACCCCTGAATGAATATACCAACATGGATCAGATTGGAAGCACTTATTCAAGCAGCGACACAAACGAAATACATGGGTAG

Transcript

aech_s0029.g18.t1

CACACCACAACAAGAAAGAGAAGTTCTGCTTAACATTTACGCTCGAGCAAATGGGAGAGGATGGTTCATGTCAAGTGGGTGGAATGACTCAACCATGGGTGCACACCATTGCTCCTGGTATGGCGTGACTTGTCATACAAACACATCACATGTAAAGACACTTGCGCTCCCTTACAACAACCTCAATAGGTCCCTTCCATCCAACATATGGAAGATCCGTAACTTATTCTCCCTTTGTGTACCTGGAAATCCTGGTCTCCATGGAAACATTCAAGACCTTCTATTTGGAAATATGAGTAATTTGTTGACTGTTGTACTACGCGGATCCTCGTTGACGGGGAAGATTCCTGATGACTTTGTCAAACTGACACATCTGCAGAACTTTTTCGGAGGCATCATGAATGGCCCAGGATTCTCTGGTCACCTGCCAGACGACATTGGAAACATGACAGACCTGCGACGTCTTTCCATTCCAGGAAATAACTTTACTGGAAAAATACCGACAAGCATCTCTCGATTGAAAGGGCTAGGCCATCTTAACCTCCGAAATAATCCTGGCATGATGCACGGAAACCTGGATGACTTATTTGCGATTAGCTCATTGAAAATCTTGTACGTATCCGGAGTTCATCTGAGTGGAAAATTACCCCATGTATTTCCAGAAAATTTAGCGCAAATTTTCTTACCTAGCAACAACATATCAGGAGAGCTCCCGAGGGGTACCAAACCACCTTTCTTAAACCTTGCGAACAACCAGCTTACTGGGGATATCCCTGGCCATTGGCTAGTTTCGGGATCGAACAAATCGTTGTTAGACTTGTCACAGCACAAATTTTCATCAATCAACGAAGGAAAACCATGGCCTGATAACTCCACTGCTGGCGCTTTTTCATATCTTTCCTTCGCAGAAAATCGCAACTTGTCAATCAATTTCACGAGCTTTATGGGACTGTTTAAACCAACTAAACTTTATCTTGCTGGCCCATCAATTTTTAATGCAAGCCTTTGTGAAATCACAAGCCCACTTCCTGGAAATTTGTTTTCCATGCAAGAACTGAATATCTGTGATTTACATGGTAATAACTTTTACGGACCAGTCCCAAATTTTGCCGAGGATACCTCTTTGTTGACGTACCTTGATCTCTCATCGAATAATTTCACAGGTGCTCCTCCAAGTGCATTTCAAGACCTCGTTTCTCTACAGTATTTCGATATTTCCGGCAACCCTTTGATGCGAAACGAACACGACACTTCATTTTTGTTCATCCCTGACTTCTTACGGATGACAAAACCTCCCCATGGAGACAACTTTACATGTGCAGAAGGACGTCTTACGTTTAACAACGGACGCATACGTTTAGATCCAACATTTTACGACTACAAGTACTGCATCTGCGACCATGGTTACTATGGGGACAAAGGGCTGTGCCATAAATGTATGGAGGGAGGAATCTGCAATAGACCCACCATCAGCTCACCGGAAGAGCTAAAGGCTAACACGATGAAGATCTTAAAAGTGTGCTTGACATTAGTGGGTGTTTATTTCATTGTTATGCTAATTTATAATAGATATCGTCCCATCGAAAGACGCATGGAAAATGTTCACTTCAAATGTCGCCAAAGCGCTTTCTTTACTCTTAGCTTCAGCTACTTTCCAACTGTGCAACAGACACTTTCCAACTTACGTCCATGTCACAACGATCAGGGTGTTTTCTACATGCCAAACGAGCCATGGATAGAGTGCACCTCAGACACCTACTACAAGCTGAGAGCACTTGGCATTGTGTCTGTAATCTTCTATGTGGTTGGATTTCCTTTGATTGTCATCTTTCTTATGGTTCGCTTCCTTCCAAAGAGAAACTTGATGACTCCCGAAGATCGCAAGAAACTCGACGTGTGGCTTGGACCACTCTACTTACCCTACAAACCAAAGTACCAGCAGTACTTCGAGATCCTCATGCTTATTCACAGATTGATTCTTGCTGTAGCCTTGTCCATGATTTCGTCATCGACTCTGCAGACGTTTATTATTTGGCTCGTCCTCATGACGTCGGCTCTTATCCAAATATGTCTACAGCCGTATCAAAAACACCCTAGAAGTACTGGTTCACCAACTTTAAATGAGCAAGGGAAGCGCAAGATCACACTGGAACAAATTTTCAGTGAGAATGTGATGGAGCCCACAGTGTTACTTGTGCTTTCCATGTCCTTTATGGTGCTTAGGTTTTCGGTCCTGGACGAAAATTACGTCGGTGTTTTCGTTTGGCTGGTGATGATCATCAATGCAACAGTCTTTGTCACTCTTATAGGTGGCATCCGCTATCGCCTGGTTGTGCTGAAAGGTGGGAGACCCCTGAATGAATATACCAACATGGATCAGATTGGAAGCACTTATTCAAGCAGCGACACAAACGAAATACATGGGTAGGATGCAAAAGAGTAAGAAACAGCTGAAGTTGATGCTGGGTACCACTTGCATGTTAGTCCTTAGCACGTTGGATTAAAGTGCATGGGTTCGG

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00560	LRR_1	Leucine Rich Repeat	Repeat	Interproscan
PF13855	LRR_8	Leucine rich repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001611	Repeat	Leucine-rich repeat	Interproscan
IPR051848	Family	Polygalacturonase-Inhibiting Protein	Interproscan
IPR032675	Homologous_superfamily	Leucine-rich repeat domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR48059	POLYGALACTURONASE INHIBITOR 1	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan