Gene detail

Detailed information of aech_s0030.g33.t1 in Acropora echinata

Genomic Location: sc0000030_pilon:497433...512699
NR annotation: XP_029189979.2, 28S ribosomal protein S7, mitochondrial-like isoform X2 [Acropora millepora]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

aech_s0030.g33.t1

CTTTAACCCATTGAAAGACAAGCATCACTGGTTAATACGACTTACCCAAAGTTATAGATATCAGAAGCAAGAATGTCCACTCCATTTTCGCGCTCGGGATACTTTGGTGGCTGGACGAAGTACTGCTCAGTGATGTGTCGGCCTAACTGTGAGGAATTTGCGCGTCCGCTTATTTTTGTTGCCGATTGAATAAATGAGTAAATTTGTCAACTGTATGATGTGGGATGGAAAGAAATCTGTTTCACAGACCATATTTAAAATGGCTCTTGAAGATATCAAGGCAGAGCAGCTAAAGAAGCGCAGGATGTCTTCTGACCCTGAATCAATTCTGGCTGATCCGCTAAAGATTTTCACAGAGGCTGTCGAGAACTGCAAACCAGTTGTGGGTGTCATAGCCATGAGAAGAGGAGGAAGAGTCTTCCAGGTCCCGACACCACTCCCTCCCAATCGTCGCCGTTTTCTCGCAATTAAATGGTTGATAACTGCTGCGCGGGAACAGCAGAAAACAAACAAAAACGCCAGGATGTACAAGAAGCTCGCAAAGGAGTTACTCGATGCCTACAATAACGAGGGCACTGTGATAAAAAAGAAAATTGAACTTCACAAGCGAGCAGAAGACAACAGAGCCTTCGCCCATTATCGGTGGTGGTAGCATGACCCCTGCAGAGTTCCAGGTTGCTAGAAAATTATCATTTAACTTAAACACTCTGATTTCCCATGAATGACAACGAAGCAATTTTACCTTTGGTTTTGATAGCGTAGATCTGCATCTACGTGTTCCACGCTGCAAAATATGACTCCTAACAAAGTTTATATTTCTACATAGCGGCAGCGGGCGTCAGACATCCTCAGTCTTTTTTTTGGGCTGACAACACCAAGCTGCTGATATTTTTCTGATGCTGCAGATCAAAACCACAGTGCCCCACGCAAGTGTCTGGGGAATTTTGTGCAGCGGTTGACAATGACACATTTTCTATTCGTTACCCCTAAAAATTCAGGAGCCTTCCCGAGAATGGTTCGCCTTCAAGTTGACGTTCAGGACATTTCGTTAAAACTGAAACCATCCTCGCTGGAAGCCTGAAACCGACTTCTTTCATTGCCCTAAAAGTCCCGAATGCATAAAATCAAGGTTAAGTCCGCGAAAGAAGTGAAACCAAAAACGACGTGACTTAAACATGACTGTAAATGTTGTACTTCTGGGACAAGACACACTTTGAACTACTGCTGAGTTGCAAGGGTTGAGGCTGCGGTGTTTGATATCCACAACACCAAGTGCTTTTGTTGTTCAAGTATTTCGGCTTACATAATGATGAAATTGAGAACTGCGTGAGTTTGTTCATGAAATAAACGCAAAATGCTGAATTCTCGCCGAATACGTCGTTCCTCGTCGCCTATTCAAAGTCTAAAGTTTGAATCAAGAATGATATGAAAAAAAAAAATTGAACCCTCCAGCGCTGAAAAGAATGGTTAGTTCTTCACTTGATAAGCCCCATTATGGCATTTAAGAAGTCCCGTGCAATAAGTCCTGCGTGATCAAAGTCACGGTTTCGAAATCGGACTGGAATCGAACCGGAACGAACTGGATCAAACCAATATGAAGTTTTTAAACGCTGTCTGCACTTTTAAGTAGTCGTCTTACTTGTTAAAGAGAAAAAAGAAGAAAACCCAAACGAAGCTGGCACACGTTCTGCTGGCTAATTCAACCGTTTTCAATAGGAAGGGGTGGGCTTTGTTATTTGACCTGACTGAACCTGTTGACGTCTATACTAATGGCATGCGCCACTGGGCAAATGATCTCACTTTCCCAATTGAGCTTTTTTGGTGTCCATTCCCTCGCTAAAGGAGACTGTACACTGCCAACAAACTGAGTGCATGCTGGTATGCAATGGCGAAGTATGATTTGGTCTGACCGATTTGACTAAACAAAGGGTTATCAATTGCTTATCACCGCATAGAAGGTTTTTCAAGGTTGTACAAGAAGTTTGCTGCAAGACTGTTAGACAGTCAACCCCCCTTTGGTTGAAGCAACGAAAAACATGTGTTACTCAATAATTGCTAATCGAAAAG

Protein

Uniprot

Uniprot term	Description
Q498Z6	Small ribosomal subunit protein uS7m OS=Danio rerio OX=7955 GN=mrps7 PE=2 SV=1
Q6DDY9	Small ribosomal subunit protein uS7m OS=Xenopus laevis OX=8355 GN=mrps7 PE=2 SV=1
Q5ZMU0	Small ribosomal subunit protein uS7m OS=Gallus gallus OX=9031 GN=MRPS7 PE=2 SV=2

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00177	Ribosomal_S7	Ribosomal protein S7p/S5e	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR023798	Domain	Small ribosomal subunit protein uS7 domain	Interproscan
IPR000235	Family	Small ribosomal subunit protein uS7	Interproscan
IPR036823	Homologous_superfamily	Small ribosomal subunit protein uS7 domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11205	RIBOSOMAL PROTEIN S7	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000028	Biological Process	ribosomal small subunit assembly	Interproscan
GO:0003729	Molecular Function	mRNA binding	Interproscan
GO:0003735	Molecular Function	structural constituent of ribosome	Interproscan
GO:0005763	Cellular Component	mitochondrial small ribosomal subunit	Interproscan
GO:0005840	Cellular Component	ribosome	Interproscan
GO:0006412	Biological Process	translation	Interproscan
GO:0019843	Molecular Function	rRNA binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K02992	RP-S7, MRPS7, rpsG; small subunit ribosomal protein S7	-	Ribosome	ko03011	deepkoala