Gene detail

Detailed information of aech_s0031.g38.t2 in Acropora echinata

Genomic Location: sc0000031_pilon:895503...1029437
NR annotation: XP_044181719.1, meckelin-like [Acropora millepora]
Species abbreviation AECHI · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

aech_s0031.g38.t2

ATGGCGCGTAAgttgttgatattgttcctgttgttgtcatggtgtgtttttACAGAATGCAGCGACTTTCAAATCCCCTACAAGACACCACAAAACTGCGAAGAGAATCAGTATTTTCAGTTTTCGACACTGAGCTGCGAGAACTGCCGGCCTGATCAAGCAAGAAGTGAAGATCGGCTGTCTTGTGTGTGTCGAACTGGATACAAACTGACCGAATACAAAGGTGGCCCTGAAGTTGTTTGTGAAAAATGTGTGCCAGAAAACACCACAAATTCACTTGATGGAAGTTTCTGTATCAAATGTCCAGAAAACGTTGGTTTTAATGTGCAAACTCGCACGTGCGAAAGTTGTCCAGAAAATAGCTTTCCTGCCGATCGAGATCGAAATGGTGCGCAGTTAACCACAAGAAAGTGCGTTCGCTGCGAAGGAGAAACGAGACCAGGTGCAAATTTCAAAGAAGCTTGCAGACTTTGTCACCCAAGCTTTCTTGATAAAAACAATTCTTCTTGCTTTGATTCTTGCAGTGGTGATGAATACGAGATTTCCGGAGGTGTTTGTTTCAAGAAAACAGACTTGAAACCGGTCACCGCTAACTTGTACAGAGTAAAATACAGCGACAAAGAAATCACATCAACTTATTTCGAAGAAAATTTGAGAGCTGCTGAAGCCCTGTGCAAAGCTGATTCAAATTTTACTGCTTGTCAATTATTGGGAAACCTGTGTGTATTACTGAATTACATCCAAGAGGAAAGTGCATGCGCATTCTATTTCGAGGTTTCAACAAGAATTTCGTCAACAGTTCCTGTTTATAATAAAAATAATGACTGGCCTGTGGTTATGCCATGGCTTTATTATGGATCAAATAGTGTAACAGAAGTTGTAGATGACAATGGCATAACACAGAAATTTGAATCAAACGCGGAGCTAAACTTTCTTTTTGCAGTTTTCACTTTAAATGGCTCATTTGTTGGTATTGAAACGGGTCTTGATGTTCTTCACCTTTGTCGAGACCGACCGTCAAGAATTGCAGCTGCCTCAAAGTTTGCTACAACATATCGTTCGTCTTGTTCAGTTACTGTGAAAGAGATGAACAATTCATTGTTTTTTTACGACATGTATCTCATTGTTGGTGATGACTTGTACCCTGTTCCACTTCTTGTCGAAAATTACAGGTCTAGTGAGAATGAAGCAGTCAACGAAGGAACTGACAGAGACAAGTGGAAGTTGACGCGGAGGTTCTATTTGGTAGAAAGCATTGTTGGAATGTCTGTTAATAACAAATGGATGCGTTTTGCTGAAAAAATTGAGCTGAATATCAGGATGCGTTCAACGGATGGAGAGATTTTTCCTCCTCTGCTACGTATAAGGTACAGAGCTCTGGATGTGAACGACGAGGAAGTTTTGAATGGGAATCATGAGGTTTCATTTGCAGTTACCTACGAGATGGATGACACCAAAATAACTAAAGATACAGAGATTGCTGTTGGATGCCTATCTGCTCTTGCCGTGATCCTTGCTTTGGTGAAAGTGTCTTCTTGGCGGAGACGAGAGGGCAAATTAGAGTTTGATGGCATAACAATCGTAAAGTTCATTCTTTTTTGTTTTGGGACATTTTCAGTCATGCTTTTCTGGATTGCATTTGGCATGTCATTTCAATCTCTGGTTTTCTTCAAGCAGCAAAAAACAGTTTCCATTCTTCTGCCAGCAAAAAGCCAAGATCAAGAGACACTTTTTCTCACATTGCTATATGTTGCCTTTGCATTTAAGCTCCTTGATGCATTTCACATATTACTAACACAGATCTTTTTCGACATCTTTTTCATTGACTGGGAACGCCCTCAGGGGAGAGTCAACCAGCCTACTCAGGGTGGAGGGGCAGGGGCTGGTGATGCCCCTGTCAGCATCTGGCGAACGTTATTCATCGCAAATGAATGGAATGAAATCCAAACTATTCGCAAAACAAACACAGAGTTGCAGATATTTCTGGTGTTGTTCTTCTTAAAGGTTGCAGGGTTTGAGTATTTGTCTACTACCGACCCTTTCAGCAGATACTCAGCAAGCGCTGACAATGAATACATTGGGGAGTTCAGCCAAGTCCTGCGATTTGCTGTTCTTTGTATTGTATTCTTGTCCGTAGAAGTTGTGCAGTGGTTTTTCTTTGCATTCATTTATGAGCGTTTCTTTGGGGATGCCCTGGGTGACTTCATCGATTTGTGCTCAATGAGTAATGTGAGCATCTTTATTTTAGAGAATAATCGCTATGGTTACTACATCCATGGGCGTTCAGTTCATGGCCATGCTGATACCAACATGTTGCAAATGAATGAACAACTCAAACGCGAAGAGGATGATCTGTGTGGAAAAAGGGGCCTGGAACCTAATTCTGAATTACAGACCTTTGAAATAGAGGTACCAGCCAAGTTTCGCCAGCAGTATGACAACGTTGTCAGGCCACTGCGTCAAGCAGAGTCACAGCAGCAGAGGCGAAATATGGCAAATTCCATGGGTCAAGATGGCCGCATTACTAGCCTCCCTCCATCAGTCGAGAAGCGTCTTCTTGCTTACAACACTCTCAACCAGTTTTTATCGGCTTTTATCGATCACTCGCTGAGGGACCAGGTTTACCTTGTCAGGGGCAAACTCCTGTTTGAGCATACCTTGAACATGGAATTAAAAGACCAACCACCGTCAGATAAAGCCATATTTTATAACGACAAGGGCCGTTTATTCAACTCCGTTCTTCTTTACGGTCATGAGTGGACATTAATGATATTTGATCTTCTCACGTTTGCCTTTGTTGATTCCCTTGAGCAAGATTTTGTTCTCGCGGGAGTTTTTACCTATCTTGTAACGAAGATTCTGATTATATTTAGAAACAAGTTTAGGAGGAAAAACATCTCCATTAAGACACTAGCCGATGGAAGGTTTTTGATCTGA

Transcript

aech_s0031.g38.t2

AAGTAATTTTCATAAGGAATACACATTTTCAGCTTCTACCCTTCAATCGAAAAGCCTGGAGACGAGTACAAACTGTGCAAAGTGAAGAAAAATGGCGCGTAAgttgttgatattgttcctgttgttgtcatggtgtgtttttACAGAATGCAGCGACTTTCAAATCCCCTACAAGACACCACAAAACTGCGAAGAGAATCAGTATTTTCAGTTTTCGACACTGAGCTGCGAGAACTGCCGGCCTGATCAAGCAAGAAGTGAAGATCGGCTGTCTTGTGTGTGTCGAACTGGATACAAACTGACCGAATACAAAGGTGGCCCTGAAGTTGTTTGTGAAAAATGTGTGCCAGAAAACACCACAAATTCACTTGATGGAAGTTTCTGTATCAAATGTCCAGAAAACGTTGGTTTTAATGTGCAAACTCGCACGTGCGAAAGTTGTCCAGAAAATAGCTTTCCTGCCGATCGAGATCGAAATGGTGCGCAGTTAACCACAAGAAAGTGCGTTCGCTGCGAAGGAGAAACGAGACCAGGTGCAAATTTCAAAGAAGCTTGCAGACTTTGTCACCCAAGCTTTCTTGATAAAAACAATTCTTCTTGCTTTGATTCTTGCAGTGGTGATGAATACGAGATTTCCGGAGGTGTTTGTTTCAAGAAAACAGACTTGAAACCGGTCACCGCTAACTTGTACAGAGTAAAATACAGCGACAAAGAAATCACATCAACTTATTTCGAAGAAAATTTGAGAGCTGCTGAAGCCCTGTGCAAAGCTGATTCAAATTTTACTGCTTGTCAATTATTGGGAAACCTGTGTGTATTACTGAATTACATCCAAGAGGAAAGTGCATGCGCATTCTATTTCGAGGTTTCAACAAGAATTTCGTCAACAGTTCCTGTTTATAATAAAAATAATGACTGGCCTGTGGTTATGCCATGGCTTTATTATGGATCAAATAGTGTAACAGAAGTTGTAGATGACAATGGCATAACACAGAAATTTGAATCAAACGCGGAGCTAAACTTTCTTTTTGCAGTTTTCACTTTAAATGGCTCATTTGTTGGTATTGAAACGGGTCTTGATGTTCTTCACCTTTGTCGAGACCGACCGTCAAGAATTGCAGCTGCCTCAAAGTTTGCTACAACATATCGTTCGTCTTGTTCAGTTACTGTGAAAGAGATGAACAATTCATTGTTTTTTTACGACATGTATCTCATTGTTGGTGATGACTTGTACCCTGTTCCACTTCTTGTCGAAAATTACAGGTCTAGTGAGAATGAAGCAGTCAACGAAGGAACTGACAGAGACAAGTGGAAGTTGACGCGGAGGTTCTATTTGGTAGAAAGCATTGTTGGAATGTCTGTTAATAACAAATGGATGCGTTTTGCTGAAAAAATTGAGCTGAATATCAGGATGCGTTCAACGGATGGAGAGATTTTTCCTCCTCTGCTACGTATAAGGTACAGAGCTCTGGATGTGAACGACGAGGAAGTTTTGAATGGGAATCATGAGGTTTCATTTGCAGTTACCTACGAGATGGATGACACCAAAATAACTAAAGATACAGAGATTGCTGTTGGATGCCTATCTGCTCTTGCCGTGATCCTTGCTTTGGTGAAAGTGTCTTCTTGGCGGAGACGAGAGGGCAAATTAGAGTTTGATGGCATAACAATCGTAAAGTTCATTCTTTTTTGTTTTGGGACATTTTCAGTCATGCTTTTCTGGATTGCATTTGGCATGTCATTTCAATCTCTGGTTTTCTTCAAGCAGCAAAAAACAGTTTCCATTCTTCTGCCAGCAAAAAGCCAAGATCAAGAGACACTTTTTCTCACATTGCTATATGTTGCCTTTGCATTTAAGCTCCTTGATGCATTTCACATATTACTAACACAGATCTTTTTCGACATCTTTTTCATTGACTGGGAACGCCCTCAGGGGAGAGTCAACCAGCCTACTCAGGGTGGAGGGGCAGGGGCTGGTGATGCCCCTGTCAGCATCTGGCGAACGTTATTCATCGCAAATGAATGGAATGAAATCCAAACTATTCGCAAAACAAACACAGAGTTGCAGATATTTCTGGTGTTGTTCTTCTTAAAGGTTGCAGGGTTTGAGTATTTGTCTACTACCGACCCTTTCAGCAGATACTCAGCAAGCGCTGACAATGAATACATTGGGGAGTTCAGCCAAGTCCTGCGATTTGCTGTTCTTTGTATTGTATTCTTGTCCGTAGAAGTTGTGCAGTGGTTTTTCTTTGCATTCATTTATGAGCGTTTCTTTGGGGATGCCCTGGGTGACTTCATCGATTTGTGCTCAATGAGTAATGTGAGCATCTTTATTTTAGAGAATAATCGCTATGGTTACTACATCCATGGGCGTTCAGTTCATGGCCATGCTGATACCAACATGTTGCAAATGAATGAACAACTCAAACGCGAAGAGGATGATCTGTGTGGAAAAAGGGGCCTGGAACCTAATTCTGAATTACAGACCTTTGAAATAGAGGTACCAGCCAAGTTTCGCCAGCAGTATGACAACGTTGTCAGGCCACTGCGTCAAGCAGAGTCACAGCAGCAGAGGCGAAATATGGCAAATTCCATGGGTCAAGATGGCCGCATTACTAGCCTCCCTCCATCAGTCGAGAAGCGTCTTCTTGCTTACAACACTCTCAACCAGTTTTTATCGGCTTTTATCGATCACTCGCTGAGGGACCAGGTTTACCTTGTCAGGGGCAAACTCCTGTTTGAGCATACCTTGAACATGGAATTAAAAGACCAACCACCGTCAGATAAAGCCATATTTTATAACGACAAGGGCCGTTTATTCAACTCCGTTCTTCTTTACGGTCATGAGTGGACATTAATGATATTTGATCTTCTCACGTTTGCCTTTGTTGATTCCCTTGAGCAAGATTTTGTTCTCGCGGGAGTTTTTACCTATCTTGTAACGAAGATTCTGATTATATTTAGAAACAAGTTTAGGAGGAAAAACATCTCCATTAAGACACTAGCCGATGGAAGGTTTTTGATCTGATGCAAACTCTTCTTTCTTAATTAACTCAACAATGTTTGTTAGTAACGACCACGCGATTTCACTGTCTAGAGGAATATGCTAAAGATGAGATTCTTTCATCGTGACGCCCGCCATGTAGTAATTAAGAGCTAAAAGTACACAAGTTCATTAATTTTACTACAAAAAGAATCCGAAGTAACAAAATGTGTTGATGGCG

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q5HYA8	Meckelin OS=Homo sapiens OX=9606 GN=TMEM67 PE=1 SV=2
P0C152	Meckelin OS=Rattus norvegicus OX=10116 GN=Tmem67 PE=1 SV=1
Q8BR76	Meckelin OS=Mus musculus OX=10090 GN=Tmem67 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005384 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF09773 all species →	Meckelin	Meckelin (Transmembrane protein 67)	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR019170 all species →	Family	Meckelin	Interproscan
IPR009030 all species →	Homologous_superfamily	Growth factor receptor cysteine-rich domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR21274 all species →	UNCHARACTERIZED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0035869 all species →	Cellular Component	ciliary transition zone	Interproscan
GO:0036038 all species →	Cellular Component	MKS complex	Interproscan
GO:0060271 all species →	Biological Process	cilium assembly	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K19348	TMEM67, MKS3; meckelin	-	Cilium and associated proteins	ko03037	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.