Gene detail

Detailed information of aech_s0037.g106.t1 in Acropora echinata

Genomic Location: sc0000037_pilon:1683181...1685869
NR annotation: XP_044172456.1, heterogeneous nuclear ribonucleoprotein A3-like [Acropora millepora]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

aech_s0037.g106.t1

TTTCAGTTTTTTCCTTCCTTCCAAGTCAAGAAGAGATATCTCCTACTTAAAAAAACTGAAATGGCAAACGAAGCAAACCAGGATGATCGTCTCAAGAAGCTCTTTGTTGGCGGTTTGAAAAGAGACACAAGCGACGACACTCTCAAAGAATACTTTGGCAGTTATGGAGAAATGACTGATTGTGTAGTTATCCGTGATAACTTGAAGCAGTCCAGAGGTTTTGGTTATGTTACTTACGCTGACAAAGAAAGCGTAATACAAGTTTTAATCGACAAGAAAGAGAAGCCTCACAGCATCGACGGGAAAGAAGTGGAGGTAAAACGCGCCATTCCACGCGACGACTCAAGTCCAACGTCTCATCTCAAAACAAAGAAAATATTCATTGGTGGTTTAGCGGACGAAGCTACTGCTGAAGACGTGAAAAATACTCTCGCTGAACAAGTTCGACAAAACTTCCCAACGAGCGTGGATTTGATAATGCGAAAAAACGAGGACGGCAGTACTTCTACCAAACACCGCGGCTTCTGCTTCGTCGAATTCGAAGACGAAGACCTCGTTGATGAACTCTGTTGTATAAAAAAAGTGACCATCGCTGGAAAGGCAGTCGAAATCAAGAAAGCTGAACCCAAAGACAAAGCTGAGAAGGGAGGAGGACGCGGCGGAGGAAGAGGTGGTCGGGGAGGCATGGGTGGCCGTGGTGGCAGAGGCGGTGGCGGAGGTGGTGGTAACCAGTATGGCGGTTATCAGAGCAGTACCTACGACCAATACTACTCTGGGGGTGGAAGTTATGGTggttacggccagggtgatggttacggttacgACAGCTATGGGTATGGTACCATGGGAGCCTATGCACAAGCACCTACTAACTATGGCCCACAACAAGGATATGGTGGCAGAGGAGGAAGATACAGACCATACTAAAGGGTTTTTGAAGTCTAAGTCGTCATAGCCAGACATAAGTTACGTTAAGGCCAGGACCTAGGCTTCAAGGAACGCAGTGTTGCAGTTGCAGTTGATCCACCAGTGTTAAGATGCAGTGTAGGCTACCTTCCAATTGCAGAAAGAGTTTGCCAAGTTGCAGTATACCATTTTACATAGGAAACTTTTTAATTCACACTTACCTTTTTAAGAGTTGTCTGTATAGAATCTTAGTTGTCATTAAAGTTTGCTAGGATAAGAATAAAGTCTTGCTCTTGCTTAGTCGTGATTAGTTTTGTCTAGGAACTGAAGAAATTCAGACAAAGACAGTGAATCTTGACCAGGTAAATCCCCAAATAGACCCACAAATACAATTTTATGAAGAATGTGACAGTCACAGCAGGGCTGGGCTTGTCTCCACATACTCCCCAGCAGTGTCTTGCTCTTCACTCACTGGTACATGAATATAGTTGGGCAAAGGAAAGCTTTTCTATGTTTGATAAGTTTGCACAGTTCATGAGGAATCCTGGAATAGGAAGTTGCAATTCTTGGATGAACAACCAATAAATTTCAAAGCAATGTCATTATAAGCTCTGATGTATAAACCATTTATTACAGAGGGATAAGGCTGTTACTGATATAACAGAAATCTAATCCAATGTAAAAAAAAAAAAGGCCTCTTTAAGTGGAAGGAATTAGATTAATGGTGTGGCAAATTTCTTAAAAAGATTGAAATGAGTAATACTAAAGAATGATTTCTTTTTGTGGGCTGAGTGAAAATGTTTTGGTTAGTGAATGCTGTGAAATAGTCACTCAAATGAAACTTGATTTCATTGGGAGGATATTACCTTGGGGCTCATTTGTGAATAAGATAAGCATGTAGAAGTGACACCATCTTCAAGAGAGAAAGTTAAAAAGCAACAGGTGGTAAAGAGAAATCTCAATGGTGATATGGCTGAGTTACCTGATAAAAGGAAAGAAATTATTTTAAAGCTGTTTAAGAAGTGCAGTGTTAAATTAGGTGAGTTTGTCATCAGTCTGGCAAATGAAAAATCATAACCAGTGCAAGAGTTCAGATTCACCAACCAACAGATTGTCTCCTGGAGAATTTACAGGTGCAATTTTAATTGGAGATGGACTGTTTTCTTCTGTAGTGCTCTCTGGAATGTGTTGATGTTCAACTTCTTGTTGCAATTTGCACAAGACCAGCAACAGGTTAGAGGTCAAAGGATCACTACCTGAGCACTCTTCAAAATATTGAAGCAAGGAGACTTTGGCAACTGCACAGCTGATTTGGTTTGTATGCTAGTCAGTGAGGGGGGAAAGAGGCTTAACAGGGGTATCAaatgataga

Protein

Uniprot

Uniprot term	Description
Q32P51	Heterogeneous nuclear ribonucleoprotein A1-like 2 OS=Homo sapiens OX=9606 GN=HNRNPA1L2 PE=1 SV=2
O43347	RNA-binding protein Musashi homolog 1 OS=Homo sapiens OX=9606 GN=MSI1 PE=1 SV=1
P17130	Heterogeneous nuclear ribonucleoproteins A1 homolog OS=Xenopus laevis OX=8355 GN=hnrnpa1 PE=2 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00076	RRM_1	RNA recognition motif	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000504	Domain	RNA recognition motif domain	Interproscan
IPR035979	Homologous_superfamily	RNA-binding domain superfamily	Interproscan
IPR012677	Homologous_superfamily	Nucleotide-binding alpha-beta plait domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR48033	RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0000790	Cellular Component	chromatin	Interproscan
GO:0005654	Cellular Component	nucleoplasm	Interproscan
GO:0010468	Biological Process	regulation of gene expression	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K12741	HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1/A3	-	Spliceosome	ko03041	deepkoala