Detailed information of aech_s0037.g126.t3 in Acropora echinata

Genomic Location: sc0000037_pilon:1938553...1977280
NR annotation: XP_044178533.1, LOW QUALITY PROTEIN: spectrin alpha chain, non-erythrocytic 1-like [Acropora millepora]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot
Uniprot termDescription
P16546Spectrin alpha chain, non-erythrocytic 1 OS=Mus musculus OX=10090 GN=Sptan1 PE=1 SV=4
P16086Spectrin alpha chain, non-erythrocytic 1 OS=Rattus norvegicus OX=10116 GN=Sptan1 PE=1 SV=2
Q13813Spectrin alpha chain, non-erythrocytic 1 OS=Homo sapiens OX=9606 GN=SPTAN1 PE=1 SV=3

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF13920zf-C3HC4_3Zinc finger, C3HC4 type (RING finger)DomainInterproscan
PF00536SAM_1SAM domain (Sterile alpha motif)DomainInterproscan
PF13855LRR_8Leucine rich repeatRepeatInterproscan
PF00435SpectrinSpectrin repeatDomainInterproscan
PF13499EF-hand_7EF-hand domain pairDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR018159RepeatSpectrin/alpha-actininInterproscan
IPR001841DomainZinc finger, RING-typeInterproscan
IPR013761Homologous_superfamilySterile alpha motif/pointed domain superfamilyInterproscan
IPR001660DomainSterile alpha motif domainInterproscan
IPR001611RepeatLeucine-rich repeatInterproscan
IPR002048DomainEF-hand domainInterproscan
IPR003591RepeatLeucine-rich repeat, typical subtypeInterproscan
IPR013083Homologous_superfamilyZinc finger, RING/FYVE/PHD-typeInterproscan
IPR018247Binding_siteEF-Hand 1, calcium-binding siteInterproscan
IPR002017RepeatSpectrin repeatInterproscan
IPR032675Homologous_superfamilyLeucine-rich repeat domain superfamilyInterproscan
IPR011992Homologous_superfamilyEF-hand domain pairInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR11915SPECTRIN/FILAMIN RELATED CYTOSKELETAL PROTEINInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0005515Molecular Functionprotein bindingInterproscan
GO:0005509Molecular Functioncalcium ion bindingInterproscan
GO:0005886Cellular Componentplasma membraneInterproscan
GO:0030036Biological Processactin cytoskeleton organizationInterproscan
GO:0030054Cellular Componentcell junctionInterproscan
GO:0030864Cellular Componentcortical actin cytoskeletonInterproscan
GO:0042995Cellular Componentcell projectionInterproscan
GO:0051015Molecular Functionactin filament bindingInterproscan

TOP