Gene detail

Detailed information of aech_s0039.g155.t2 in Acropora echinata

Genomic Location: sc0000039_pilon:2067500...2097132
NR annotation: XP_029195614.1, medium-chain specific acyl-CoA dehydrogenase, mitochondrial-like [Acropora millepora]
Species abbreviation AECHI · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

aech_s0039.g155.t2

CCTTCACAAACGCCTCTTCTTCGAGGATTGGACTTTGCTCCTTCACTCTGTGTCGTTGTGAAAAAGTGAGGAAGAATAATGGCCCTCTTGAACTCAATGCGGCGTAATGTTTGTCTTGGTTTTCAGAAAGGAGCTTTCTCTGCTGGGATAACAGCTCTGAAGTCAAAGTTCAGTACAGAGGCTTTAAAGCTGGAAACTTCTTCATTCAATTCTGGCCTTAATTTTGAATTGTCTGAGGAGTTGCAGCAACTTCAGGATATGGCCAGAAAATTTTGCTATGAGGAAATCATTCCAGTTGCTGCTGAACATGATAGGACTGGCGAGTACCCTTGGGATATCATTAAGAAAGCACATGCTCTTGGGCTGTTAAATGGTCATATTCCAGAACATTGTGGTGGGCCTGGCTTGGGTATCCTTGATGGGTGCGTTGTTACAGAAGAGTTAGCCTATGGATGCACAGGGATTCAAACTGCTATTGAAGCCAATTCTTTGGCAGAAATGCCAGTGGTCTTGGCTGGTAACAATGAGCAACAGAAGAAGTACCTTGGACGGATGGTGGAGGAGCCTTTGATGGCGGCCTACTGCGTGACAGAACCAGGAGCAGGCTCAGATGTAGCAGGTATCAAAACCAGAGCTGAAAAGAAAGGGGATGAGTATGTCATCAATGGTCAGAAGATGTGGATAACCAACGGAGGAGTAGCAAACTGGTACTTTCTTTTGGCACGCACCGATCCTGATGCACCAGCTGGTAAAGGCTTCACCGGCTTTGTGGTGGATGCCGATACACCTGGTATTACATTGGGGCGAAAGGAATTGAATATGGGCCAAAGAGCCTCTGATACTCGTGGCCTAACATTTGAAGACGTTGTTGTACCGAAAGAGAATGTTCTGGGGAAAGAAGGCCTTGGATTTAAGATTGCCATGGGAGCGTTTGACAAGACTCGTCCACCGATGCTTAAACGTGCGGAAGTGGTCATTAATAAGTCTGTGTTTAATCCCTCTCGCAGGTTTACAAAATTGAGTCCAATGTTCTGGGGAAAGAAGGCCTTGGATTTAAGATTGCCATGGGAGCGTTTGACAAGACTCGTCCACCGGTTGCTGCAAGTGCTGTCGGCCTTGCTCGGAGAGCGTTGGAGGAGGCCACCAAGTATTCGATGGAGAGGAAAACAATGGGCAAACCGATATTCATGCACCAGGCTGTGAGTTTCATGTTGGCTGATATGGCGATCGGTGTGGAAAGTTCTCGTTTAGCCATGTACCGATCTGCCTGGGAAGTAGATCAGGGTCGCCGAAACACGTATTACGCCTCCATTGCCAAGTGCTTAGCCGGGGATGTGGCCAACAAGTGTGCTACTGATGCGGTTCAGATATTTGGTGGCAACGGATTTAACTCTGATTACCCTGTTGAAAAATTGATGAGAGATGCGAAAATCTTCCAAATTTACGAAGGCACAGCGCAAATTCAGCGAATGATAATCGGACGGGAGCTTATAGAGAAAGCCAAGATGACAACAATGTAAAGAAGGAACGATAATCTGACAATTGATGACTCATTTTATTGTACGGAAATAACTACCTGGACAGTCTGGAGAGTAGTGTTGTAGTTGTTTTTTATTTTCCTTTTAATTCAGGAGAACAAAATACTTTTGCTACAAGTTCAATTTTTTCCTTAGTATCAATAATTTATCAACGACAAGAAAGCGCTTATTCGAAAACTTCAAGCTCGCGTAATTACTCTTTTCATTTAAGTTTGTTATGGAGGAAATAATGATGTCTTACTTTTTTATAATCTTATGTTGTATGTATCCCATACCACTTGTGGGCAGGATGCTCATTCAATCAGTTGTGTAAAGTAGAAATTGTACAATGTTATAGCAAGCACTTCAAGATAAACAGCAGAAATCATATTTTAAGGCTATGCGGCGATTTTTCTGTGTCTTTGTTGGATATTGCTTACAAAAGCTCACTTGTAGTGCGAAAAATTTGCATTAAAATTAAATTGACCAAATTGGGCGATTGACAGTTGTCTGTAGCATCTTTCTCATGTATCTACCCATTGAAAAGGAAAAATAATTTCAGAATCTTTGG

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q3SZB4	Medium-chain specific acyl-CoA dehydrogenase, mitochondrial OS=Bos taurus OX=9913 GN=ACADM PE=2 SV=1
P41367	Medium-chain specific acyl-CoA dehydrogenase, mitochondrial OS=Sus scrofa OX=9823 GN=ACADM PE=1 SV=3
P11310	Medium-chain specific acyl-CoA dehydrogenase, mitochondrial OS=Homo sapiens OX=9606 GN=ACADM PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0006635 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02770 all species →	Acyl-CoA_dh_M	Acyl-CoA dehydrogenase, middle domain	Domain	Interproscan
PF02771 all species →	Acyl-CoA_dh_N	Acyl-CoA dehydrogenase, N-terminal domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR006091 all species →	Domain	Acyl-CoA oxidase/dehydrogenase, middle domain	Interproscan
IPR013786 all species →	Domain	Acyl-CoA dehydrogenase/oxidase, N-terminal	Interproscan
IPR050741 all species →	Family	Acyl-CoA dehydrogenase	Interproscan
IPR006089 all species →	Conserved_site	Acyl-CoA dehydrogenase, conserved site	Interproscan
IPR009100 all species →	Homologous_superfamily	Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily	Interproscan
IPR046373 all species →	Homologous_superfamily	Acyl-CoA oxidase/dehydrogenase, middle domain superfamily	Interproscan
IPR037069 all species →	Homologous_superfamily	Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR48083 all species →	MEDIUM-CHAIN SPECIFIC ACYL-COA DEHYDROGENASE, MITOCHONDRIAL-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0016627 all species →	Molecular Function	oxidoreductase activity, acting on the CH-CH group of donors	Interproscan
GO:0050660 all species →	Molecular Function	flavin adenine dinucleotide binding	Interproscan
GO:0003995 all species →	Molecular Function	acyl-CoA dehydrogenase activity	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0005739 all species →	Cellular Component	mitochondrion	Interproscan
GO:0051793 all species →	Biological Process	medium-chain fatty acid catabolic process	Interproscan
GO:0070991 all species →	Molecular Function	medium-chain fatty acyl-CoA dehydrogenase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for aech_s0039.g155.t2.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.