Gene detail

Detailed information of aech_s0045.g119.t1 in Acropora echinata

Genomic Location: sc0000045_pilon:1696783...1707959
NR annotation: XP_044177161.1, F-box/WD repeat-containing protein 5-like [Acropora millepora]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

aech_s0045.g119.t1

TTTCCCCATACATGACGTACTTACGTAAACTCTGTTGCTTACCGGAACCACCATCACAATTTTTTAAGTCAATTCTCAATTTTAAGATGAAATCGAAAGATCGAAACATCTTTAAGCTGAACGCAGACAACATTATTTGAAATATTATGTCCCTTGAACAATCTTCACCGTCGTGTAGTCTCTGGAATAATCTACCAGATTGTTTGCTAGTTGATATCTTTGGACAACTTACTTCCCCAAAGGACATCTTACGTGCTAGTGAAGTTTGTCAGAAATGGTACCGCATTTCCAGAGACAAATTGCTCTGGAAACATCGTCTTCAAGGACAATCATGCAGTCAAGGCAACACCAAAGTTTTGAGACCTTCTTATTGGTTTGAAGAATTTAAATGGGTTCATCTCAGTGCACCGGTACTTGAGAGCCAAGTTCTTAAACTTCACACCAAAGAGGTACTACACGTTTCGTTTTCACATGATGGAAGAATGTTGGCCTCGAGTTCAAAGGATTGCAGTGTCATTCTGTGGCGTATGAATGATAGATGTCGTTTTTGTGAAGAGGATGTTGATGTCACAAACTTTGGAGATATTGTACCCTGGAAATACGTCCAGTTTACAGAGTTCAACAAAAATGACACACGACTTCTTGTCTCAGGAATATCGGAAGAAATGCAAGATCATCCTTCCACAGGCCAGATTTTTGTGTGTGAAGTTGAGAGGAATGAAAGGCTTGAATTGCATCTGATTGAACTTGTTATCAATCTTCCTTACACCATTCATGGTGCTTGGATGACTGGAAAGAGGTTTATATGCGGAAATCTAGAATATGTTCCAGAGGGTGTATATTTTGACAATTTCATGGTTACTGCCAGGCGGCCAAAATCTCAAGAGGATGATAAACTTGGTCTGATTTTTCAACGTCACGGTGGCGCTTCACCCGATGTTCCTCATCAGATTGTTCTCAGATGGATGCAGCAAAACCGGTCCAATAGTGAAACTAGCAGTGACACTGCCTCGTGGCAGGAATTGGAAACACGTGGTATTAATACCAATGGAGTCATAACTGGGATGATGTTGTCTCCTGACCTTGAGTACCTTTATGTGAACTGTCGTCCCTTTCAGGATTGTTCCCGAGATATCTCTGAGATGACCCTCACTTGTTACAGTCTAGCTACATATGAAAAGATCAATGTTCATGTTGGCCATCAAGCATTCACGGGAGGTGAAGCCCGTTTCTTTAGCTTTCCCAGTGTTGCTAAAAAGCTAGTTGCAAGTGGAGCTGAAGATCATTGTGCCCATGTTTGGCACCGACAGCATGGGGGCAAGGTTGCCACACTAAGGGGTCACACTAACGTGGTAAACTGCGTTACCTTCAACCCTAAAGGCCATCAAATGCTAGTGAGCGCAAGTGATGATCACACTATTAGGGTCTGGAAGTCTCGCAAACTCACTAAGCTTACTGAGAAAAGCGGGCAGGAACAGTTACCCACTCCGGGTCCATTTTCTCGCCGACAGGCGCCTTCAAACGAGAATCACAGCACGGCACAGGCACAACCTGATGGAAGTAGCAGTGTTGATGTCAGTTCCAGCAAAAACAGTACCGAAGAGGAATCGACGCCGCATCGCTGCACTGCTACGTCAGCAAATACAAAGCGAAAGCGCCGCAAGCGAACCATTTTCACAAGTGAACAGCTCAGTCGTCTAGAATCTGAGTTTGACGAACAACAGTATATGGTAGGAACCGAGAGGCAGCAACTGGCACAGGCGCTAAATCTGTCGGAGACACAGATAAAGATATGGTTTCAAAACCGTAGAATCAAATGGAGAAAAGAGAATAAACAAAATTTCCCAGATTTTCTGGCCAATCCTTTCAGTGTGGCTTGTGCTCTAAGGCGCAACAGCGGAATGGAAAATTGGAACGGCTAGCAAACTTATATTTACAGCGAAGGGTGAATTTCATGTAAATACCTCCTGAGAGTTCTGAGTCAttaataatggcaccaagatgta

Protein

Uniprot

Gene family

Uniprot term	Description
Q969U6	F-box/WD repeat-containing protein 5 OS=Homo sapiens OX=9606 GN=FBXW5 PE=1 SV=1
Q4KLI9	F-box/WD repeat-containing protein 5 OS=Rattus norvegicus OX=10116 GN=Fbxw5 PE=2 SV=1
Q9QXW2	F-box/WD repeat-containing protein 5 OS=Mus musculus OX=10090 GN=Fbxw5 PE=1 SV=1

Gene family	Subfamily
Transcription Factors Family	Homeobox
Ubiquitin Family	UBD\|Other\|Beta-prp
Ubiquitin Family	E3\|E3 adaptor Cullin RING\|CDC20
Ubiquitin Family	E3\|E3 adaptor Cullin RING\|F-box
Ubiquitin Family	E3\|E3 adaptor Cullin RING\|DWD

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00046	Homeodomain	Homeodomain	Domain	Interproscan
PF00400	WD40	WD domain, G-beta repeat	Repeat	Interproscan
PF12937	F-box-like	F-box-like	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001356	Domain	Homeobox domain	Interproscan
IPR036322	Homologous_superfamily	WD40-repeat-containing domain superfamily	Interproscan
IPR015943	Homologous_superfamily	WD40/YVTN repeat-like-containing domain superfamily	Interproscan
IPR001810	Domain	F-box domain	Interproscan
IPR001680	Repeat	WD40 repeat	Interproscan
IPR036047	Homologous_superfamily	F-box-like domain superfamily	Interproscan
IPR042508	Family	F-box/WD repeat-containing protein 5	Interproscan
IPR009057	Homologous_superfamily	Homeobox-like domain superfamily	Interproscan
IPR017970	Conserved_site	Homeobox, conserved site	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR20995	F-BOX/WD REPEAT-CONTAINING PROTEIN 5	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003677	Molecular Function	DNA binding	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0016567	Biological Process	protein ubiquitination	Interproscan
GO:0019005	Cellular Component	SCF ubiquitin ligase complex	Interproscan
GO:0080008	Cellular Component	Cul4-RING E3 ubiquitin ligase complex	Interproscan
GO:0000981	Molecular Function	DNA-binding transcription factor activity, RNA polymerase II-specific	Interproscan
GO:0006355	Biological Process	regulation of DNA-templated transcription	Interproscan