Gene detail

Detailed information of aech_s0045.g48.t2 in Acropora echinata

Genomic Location: sc0000045_pilon:655269...668987
NR annotation: XP_044175976.1, CAP-Gly domain-containing linker protein 3-like isoform X3 [Acropora millepora]
Species Acropora echinata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

aech_s0045.g48.t2

TATCAAGTCAAAACTTCAAACAAGGGTGATGGCTCTGTAAAGTGCCTTAAAAATCCTCTCTTTTTTCGTTTCTTGGATAATATTCACAATGCCTGGAAAGGAAAAGACAGCCGATTCGTCTTCTGGATTTGTGGTGACTGATTTTATTATGCCGGCTCGAGAAAAGCCTATTTCACATCCGCCATCAGACCCTCCTTTATGCGAAAGCTGCAAGAAATTGGAGCTGACATTTTTTGACCCAAACTGTCCTGATTGTCAAGGTATCCTTTTGGAACCAAAGACTACAATCTCTGAGATTTTTGCCATCATGCGACAATGGGTTCCACAAGTTCAACAAAATATTGAAATGTTGATCAATGAGATTCTAAGACGTGGTGCTCATATTGATGATCGTGATGGACTTACAGATATGACTTTACTTCACTATGCTTGCAAGTCAGGGGCAGTTGGTGTTGGGGATGTGTCTGCTGCAACTAACATGGTCAACAAGCTCATTTCAAAAGGCAGTGACATCAGTCAAAAATGCCGTTGGACTGATATGCTTCCATTGCATTATGCTTCCTTTTTCGATGCTGCTGCAATCCTGAGAGTTTTGCTGAAGGCATCTAATGCCAAAGATGTGAATGTCCCTTGCAAGGAATTTGATAATGGTACATCTCTGCATATTGCAGCAAGCAATTTGTGCTTGGAAGGAGCCAAGTGCCTGCTGCAACATGGAGCAGATGCATCTGTTAAAGACAAACTGAGTAGAGTGGCCCTGCATTGTATACCTGATGTGTCTGGCTATGAGCGAGATTCTGAGCCAGTAATCCTTGCAGAGAAGATGACTAGACTTCTCTCGGAGGCAGAACCACCAGCAAAGACAGCCCAAGATCAGGAGAATGAAGTCCCACAGAGTTTGATCTCTATGGGTGTCAAAATTGGTGACCAAGTTTGCATAGGAGGAAACAAGCTTGGAATCCTTCGATTCTGTGGTCAAACAGACTTTGCCTCAGGAGAGTGGGCAGGTGTTGAACTAGACAGCCCTGTAGGCAAGAACGATGGTTCTGTTGGAGGGGTGGTCTATTTTCATTGTCAACCCAAACATGGAATCTTCGCTCCGCTGTCCAAAGTCACAAGAGCAGACTCCGCACCAAGCACCCGTCCTTCTTCTCGGCCAACGTCTGCCTCTCGCATCGCTCATTCTCAAATTTCGCAAAGCAGTTCTCAGGCTTCCTCGAGGTCCAATTCGACCCCAGGTTCTCGCTCAAATTCCCCTGTTCCCATGTCACAGGTGAACGGAATGGACGAGACACTAGGTTTTCAAATTGGTGACGGTGTCACTGTCGCAGGACAGAAAAGTGGAATAATTAGATTCATTGGTCGGACGCAATTTTCCACAGGTGTATGGCTTGGCATTGAGCTCGATCAACCAGTTGGAAAGAATGATGGCTCGGTATCTGGAATCCGCTATTTCGACTGTAAGCCGAGTCATGGCGTGTTTGCCCCTCCCTCTAAAGTCACAAGAACGGGGAACCACTCACAGCGTGGTTTTGCAATCCCATCAGTCCCAGTTGGGAAAGGTAGATTCGGCTCCCAGAGTTCCTTGCAAGCCTCTCAGTCTGGATCACATGGTTCGCAGAGTGACCTATCACAGACCGACTCCAACCCGGAACTCAATGGCAGCGGTCGCAAACTTTCGAGCCAGTCTTCGCCGGATCACACGACGAGGCGAGGTTCCTCAAGTGATAAGAGCTCAACACTACGACGAGGAAGTTTACCTCAACAAAAAGCAAAGTCTTCCGCTGAATTCCAGTTGACAGAGGGCCTCAGTGTACTAGTCAACGGAGAACTTGGTGTTGTTCGATTCATTGGAACAGCGGAATTCGCCGAAGGAATCTGGTTGGGGGTGGAGATGCGGAAGCCTGTTGGAAAGAACGATGGCTCAGTTAATGGAAAAAAATACTTCACTTGCAAACCACAACATGGACTCATGGTTCGCCCATCTCGCGTAACCTGCCGAGGGATTAATTGTGCCAAATTAATAAACGAAGTGGAATCTTGAAATCTTTCGTTGGAATTGCGGAAACTTGAGTGCTAAAGTGTTTGTGTTCCTATTGGTAAGAACAATGCGAGTTTTGCGTGTTGACTCGCAATGCCTGTGGACCTGCAAACCATTCGCTGGTCCAAGGATTTTCTGAAGATAGCTCGGCAGCACCCTGCAAGAGCCAGAGCACTGTTGTTGAAAATATCTGAAGATAATTGAAGGCTGAGCTCCCAACGGTTACTGACAAGTGCAAGAGAGTACACAGGAGTGTTTTTAACTACAACCGGTCAATACTTTTAACTGTTTTATTGTAAAGTAGGTTATTTATCTTTTGGAAAAGTATTCTTAAGTATCTCGCACGCTCGAAAGGAGCATGCAAATTCACTGAACAGCGTCGGTTGTTTGATCTCATCTTAAATTTAAGCAAGGGACTTATCGAATGAACGAACCGAGAGTGCTGTTTTCTTCCAACTCTTGATTTCCTGCTCGTATCTCCTCCGAGCTCTTGCCATGCTTCGACGAAAACATCTTACTTTGTGTTCTGTGTTATTTCCTCAAACATTCACTTCATGCCGTTAAAACGCTATCACAGCAACCCCAGGTTGCCTCAAGGTGTGACTACTATTTGCATTCGTGTTCGTAGGCGTTAAAGTATTATAAATTATTTAAAGATGTTATTAACTTTTACCAATCGCCGCTTAAACTACTGAAAGAGTCTATTTTATCAAGATAATCTTAAGGTCGCTTTAGCAGCATGATTATAATGCATTGAATCGCATGGTCAAAATATATTTGATTAAAAGTGTTTATTATGT

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q8N3C7	CAP-Gly domain-containing linker protein 4 OS=Homo sapiens OX=9606 GN=CLIP4 PE=1 SV=1
Q8CI96	CAP-Gly domain-containing linker protein 4 OS=Mus musculus OX=10090 GN=Clip4 PE=1 SV=1
B9EHT4	CAP-Gly domain-containing linker protein 3 OS=Mus musculus OX=10090 GN=Clip3 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001046 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01302 all species →	CAP_GLY	CAP-Gly domain	Domain	Interproscan
PF12796 all species →	Ank_2	Ankyrin repeats (3 copies)	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036859 all species →	Homologous_superfamily	CAP Gly-rich domain superfamily	Interproscan
IPR000938 all species →	Domain	CAP Gly-rich domain	Interproscan
IPR002110 all species →	Repeat	Ankyrin repeat	Interproscan
IPR036770 all species →	Homologous_superfamily	Ankyrin repeat-containing domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR18916 all species →	DYNACTIN 1-RELATED MICROTUBULE-BINDING	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0005938 all species →	Cellular Component	cell cortex	Interproscan
GO:0031122 all species →	Biological Process	cytoplasmic microtubule organization	Interproscan
GO:0035371 all species →	Cellular Component	microtubule plus-end	Interproscan
GO:0051010 all species →	Molecular Function	microtubule plus-end binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K10423	CLIP3_4; CAP-Gly domain-containing linker protein 3/4	-	Cytoskeleton proteins	ko04812	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.