Gene detail

Detailed information of aech_s0048.g48.t2 in Acropora echinata

Genomic Location: sc0000048_pilon:734376...757680
NR annotation: XP_044174760.1, PAX-interacting protein 1-like [Acropora millepora]
Species Acropora echinata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

aech_s0048.g48.t2

GGAAGCACTGGGAACTATATGCTTTCCCGCCATCCATCACATGCCTACTCAGCGAACAACAAGAATAGAATGAGCATGGCTGAGGGACTTGTGGATGAAAGCAGCTTGAAAAAGGGTCTTTTTAAAGATGTTAGATTCTTCCTGGCCGATGAAAGCAATGAAAAGgtGAAACAAGTATTGAAATCTGGTGGTGCAGCAAGGGAGTTCTACATTAGTGACCTTGTGACTCATGTGATTGCTAAGGACACAAGTTTTCCTCAATTCAATGAAGCCAAGGAATACAACTTGACTATTGTGGAGCCAAAGTGGGTCTTTCTTAGTGCAGAGTGCAACATGCTTCTACCTGGTGATGCCTTCAAGTGTGAATCAGAGCAGCTTTTCAGAGGAATAGTTGTATGTCCATCCCAGATTCCAGAAGATGACAGAGCTGTCTTGTGGGCAATGGTGACTTACCATGGTGGCCAGTGTCAGTTAAATTTGAACCCAAAATGCAGTCACCTTGTGATACCATGTCCAACTGGAGCCAAATATGAATGTGCTCTGAAGCATTCAGAAATCATCAAGATTGTGACACCAAGCTGGGTTGTTGACAGTGTAAAAGAAAATAAACTTCAAGATGAAGCTAACTATGCACCGTGCAGAGCAGAACCCAAAACACAGTCAGAGACAACAAGCTCACTTTTGACACCTGATGACAATGATAGGACAACAACCACCCCTTTATCAGCCGGTCTTCCACAAGACACATCTCCTCCTTCAACACCAGCAGGAGTTTCATCAAAAGCGCCAATCACACTGCCGTCAACACTTATGAGTCCTATATCTCCAGTGACCACTGTCATGGCAGAGGACAAAACATCTACAGCTGTCTCTAGTTTAACTGTATCTGAAAATAGTTTTGCCAAAACCAGTGAGCATACATGGAAGGAGAGACAAAAATCCGCAGAGGATAAGGAAAATGTTGTGGAGGTACTCACTGAAGCTGTTAAAATTGGCGAAAACAATAATGAAGTCCTTTTGGGTGACAAAGAAAATAGAGGAGGGTCTGATGAAAAGCGCAAAGACAAATCACCGGATAGCAAAGGATCCAGTTGCCTGGCTGGTTGTGTTTTTACGATATCGGATTATCAAGATTGTATGGATCATGACATACTTGATACATGGATGGAAGTTATAGAACTCCATGGTGGTGTTGTCAGTCCATTTTATGGAAAACGCTGCTCTCATCTTTTGTGTTTGAACCAGCATGGAAGCTTGTATAAACAGGCACTGTCAGATGGCAAGAAAATTGTAACAGCACATTGGCTAAATGATGTGTTGTTAGCAAAGACAATGTTTGCTCCATCCAATCCCCTTCACCTGCCTGTGCCATTTGAGGATAAAGTCAGTCAGTGTCGCAGTATGGTCATCACAGTGACAGGATACACTGGCAAAGAGCGGACTTTACTTAAAAACATGATATTCATCGTAGGAGCAAGATACACAGGTTATCTTACTCGCACCAACACTCACATCATCTGTAAAAGTCCTTCTGGAGAAAAATTCAACAAAGCACGAGAGTGGGGAGTACACTGTGTTAATGCGAAATGGCTTGGAGACATAGTTACAACTGGTTACCCATCACCTTGCAACCTTGTGAGATACTCAACAATTGGTGTCGCAGACGAACTGGAAGTCACCAAAGACCTTCTCATCAGAGAACTTATAACTCCATGGCAAACCTTTGGTGAAGGCTCTGCGGTTGCGCACCAGGCAACCAATAGTGGAAAGAGAAAACCTGAAGAGCAGTGTATTCCCGACAGTGGTCAAGCAAAGAAACCAAAGTAATCTCTTATTGCCTTTACCACTGAACTTTAATTTTCAGCCTTTCTTACTCTGCCTCATTATTCTTACATGAGTACCGTAATAATAATAATTATTACCAGTAAGGCCTTGCAACGGAAAACCACAAGTTCTTCTGAAGCTCCAGAGGCAGAGGGTCCCAGAGTTCTCTTCACTGGTATACCCCCATCAGAAGTGTCCAGGCTAGTGGAGTTAATTATTGAACTTGGAGGGACTGTTGTTGGATCAGTCATGCAATGTACCCATCTTGTTACAAGAAAAATAATCCGCACGGTAAAATTCCTTTGCGCCATCTCAGTTGCACAGTATGTGGTAACACCCGAGTGGATAAACAAGAGCCACCAATCGAAGAGATTTTTAGATGCAAGTGATTATATCGTGAAAGACGCTCAGTCTGAGGAGTTGTATGATATGGAACTGAGAACTTCTTTGCAAAGAGCAAGGGCATGCCCACTTTTAAAGGGTATCTCAGTGTATGTGACTCAAAATGTCGAGCCCAATCCATCGTCCATGAAGGAGATCATTCAATGTGCTGGTGGACAGGTGCTGTCAAGTATTCCATCTCAACAACAGCTGCTAGATTGGAAAACTAAAACTACTGAGCAGGAAATGCCTGCCTTGTTGGTAATAAGCTGCGAGAAGGATGTAAAGCTCTGTTTTGACTTCCGAAGGAGAGGATTTGAAATTCACAACGCTGAGCTTATTTTATCAGGAGTCTTGAAGCAGCAACTGGATTTCGACTTATATAAACTTTGAACATTTTCTGCTTCTTGGACTTTGTTTTTAAATCGGACTAAGAAAGATATTTTTTTTTTTTAATTTTTAGCGTTGTCATAGATTGCATTTATCGCTTGGCATGACATTTTACAAGACCTAGTTACAGAAAAATAGGAAATTCTTTGGCCTTGATTGGCCAGTAATACGGTTGTGCATTCTCCAATCTTGCTTCATGAGCGCGTTTTTCCGTCGAGGACTAATTGCAGTCCACTTTTTGTGCTCTGCCATGGTTTACCAATTTGTTGTGACTTCATTTTGTACATGCTATTTTTAGTAACTTTTAATGTGAACAGACGATTATTTTCAAATTGTGATATATTACTTTTGCAAGGTAGCGTTGTCTTGTTTAGACTCAAATTATCGatataaattacatatagacatatatatatatatGCTTGTTTTTCTTAAGTGACCACACGTTTAATTAGGGTGATTTACGAAAACCGTGTTCGTTTTATTTTGTACTTTAACACGTTCTAGTCGTAGCATTTCCTTTTTATTTCCGGATCATTGTATTGGTTATTTATATTGATTGATTTCTTTGCCATTTTACTGAAATATATACCACACAGTGACAGACATTCTTTGACTTCTGAGGTGCGTTTGTAATATGATCAGTGGCAAAGTTATGTTTTGTAGTAAATTGCGAGATGGTCAGCCTATAAGTTTCGAACAAAATGACGTTGCCTTCTCACATGGGTGATGGCTAGGCCTGTGTGTTTGTCTGTGGTTGTTGTGGTTGTTTATCAAGTAAGAGCAAAAAATAAATAACAACAAATTCG

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
A0JNA8	PAX-interacting protein 1 OS=Bos taurus OX=9913 GN=PAXIP1 PE=2 SV=1
Q6NZQ4	PAX-interacting protein 1 OS=Mus musculus OX=10090 GN=Paxip1 PE=1 SV=1
Q6ZW49	PAX-interacting protein 1 OS=Homo sapiens OX=9606 GN=PAXIP1 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001384 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00533 all species →	BRCT	BRCA1 C Terminus (BRCT) domain	Family	Interproscan
PF12738 all species →	PTCB-BRCT	twin BRCT domain	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036420 all species →	Homologous_superfamily	BRCT domain superfamily	Interproscan
IPR053036 all species →	Family	Cell Cycle and DNA Repair Regulator	Interproscan
IPR001357 all species →	Domain	BRCT domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR47667 all species →	REGULATOR OF TY1 TRANSPOSITION PROTEIN 107	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0006302 all species →	Biological Process	double-strand break repair	Interproscan
GO:0035361 all species →	Cellular Component	Cul8-RING ubiquitin ligase complex	Interproscan
GO:1990683 all species →	Biological Process	DNA double-strand break attachment to nuclear envelope	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K10728	TOPBP1; topoisomerase (DNA) II binding protein 1	-	DNA repair and recombination proteins	ko03400	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.