Detailed information of aech_s0055.g85.t2 in Acropora echinata

Genomic Location: sc0000055_pilon:1206788...1264795
NR annotation: XP_044179067.1, uncharacterized protein LOC114969736 [Acropora millepora]
Species Acropora echinata · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
A6NMZ7Collagen alpha-6(VI) chain OS=Homo sapiens OX=9606 GN=COL6A6 PE=1 SV=2
A2AX52Collagen alpha-4(VI) chain OS=Mus musculus OX=10090 GN=Col6a4 PE=1 SV=2
Q8C6K9Collagen alpha-6(VI) chain OS=Mus musculus OX=10090 GN=Col6a6 PE=1 SV=2
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0000162 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF07648
all species →		Kazal_2Kazal-type serine protease inhibitor domainDomainInterproscan
PF00092
all species →		VWAvon Willebrand factor type A domainDomainInterproscan
PF00095
all species →		WAPWAP-type (Whey Acidic Protein) 'four-disulfide core'DomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR002035
all species →		Domainvon Willebrand factor, type AInterproscan
IPR002350
all species →		DomainKazal domainInterproscan
IPR036465
all species →		Homologous_superfamilyvon Willebrand factor A-like domain superfamilyInterproscan
IPR036058
all species →		Homologous_superfamilyKazal domain superfamilyInterproscan
IPR008197
all species →		DomainWAP-type 'four-disulfide core' domainInterproscan
IPR050525
all species →		FamilyExtracellular Matrix Assembly and OrganizationInterproscan
IPR036645
all species →		Homologous_superfamilyElafin-like superfamilyInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR24020
all species →		COLLAGEN ALPHAInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0005515
all species →		Molecular Functionprotein bindingInterproscan
GO:0005576
all species →		Cellular Componentextracellular regionInterproscan
GO:0030414
all species →		Molecular Functionpeptidase inhibitor activityInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
KOEnzymeEnzyme IDPathwayMap IDSource
K06238COL6A; collagen type VI alpha-Glycosaminoglycan binding proteinsko00536deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
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