Gene detail

Detailed information of aech_s0074.g3.t2 in Acropora echinata

Genomic Location: sc0000074_pilon:52410...78865
NR annotation: XP_044175566.1, uncharacterized PE-PGRS family protein PE_PGRS54-like [Acropora millepora]
Species Acropora echinata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

aech_s0074.g3.t2

ATGTCATGGGATCCACTTCCAGGTCCTGCATTAGATGAAAGTACTAAGCTATTGCTGATGAAGCTTGATATCAGCAACCCTAAAGATATGACCACAGAGGATGTTAGCGAACAGGTGGAGTTGTCTGTTTCCTCTTTAGATCCAGCATCGCATTATGTGTTTGCATTGCTCTTAAAAAGGTGCTCGGCTACGATTGCTACGTCTATTACTTTAACAACTTTTGGACGAAGAACAGCGTGTTCTAAAATAAGCGTTCAAAATGCCCAAGCAACGAACGAACCAGCCTCGTCTTTGACTCATGGCACCAAAACAAATATAGAATTCAACGTCGGGTTTAACTTGGAAGATGACTATTATTATTATGAAGTTGGATCCAGTTATGAAGAAGTCTGTGTGGATAGCGAGTGGCAGCCTCCTCTCCCATCCTGTCACGCCATCAACCACTGCCCAGAGCTAATCATACCGAGTCATGGTCACCTTACACTGAAAGATAGACAAGAAGGATCCACTGCACATTATGTGTGCAAGAAAGGTTTTAAATTGGATGGAGCACAAGAACGCACCTGCAGAGCCGATGGGGAATGGGAAAAAGACGATCCACGTTGTCTTCCCATGAGCTGCGTTCAGCCACCAAGCATTGATCATGGTGAATTTGTACCTTGCAAGCACACGGGACATACTGACTTATATGACTCCTTGCAAGATCCTCGCGAGGGTTACTGCATACAACTAAGCTGCCAAGAACACTTTGTAGAAAGCTACAAGGTTGTCAAGGTTCCAAAAAATCTAAGATGGCAAAGTGATGGGAAGATTCCGAGGGGCGCAAGAGTTTGTAAGGATGGAGAATGGATCGGTTACACGGACACAAGTTGTAAACCAGCTGCACGATTACATCCTGAGGAAGAGACGTGGCATTCCAAGACTGGTATATTACAAAGATGGAAAAATGGAGATTGGGAATATGCGTCCACGCTTGATGGTAGTGAGAACATTCTCTGTTCAACTATGTCGTGTGTTTATGGTAATCTAGCTCGGTCGGTTGTCATTTCTGGGAGCCCCAATGGAGTCAGCGGCGTTGCGGTAACATGTCCGAAGATTCGTTTTGTAGATACGATAACACCATATGAAGGAACGCTGGAGGTATTGTGTAGCTGTGAAAATATTACATGTGTGAACCAAGGCCAATGCTTATTCAGTCAGAAGAATGAGAAATTTCAGTGTAAGTGCCAGCTTCCCTGGACAGGAGAAAGATGTGAGACAAAAATAGACATTCTCTTCAATTTCACTTCACTTGGAGCCGTCGGAAGTAAAGGACCGACCACAAACATCAAATACCAAGGCACTTCATTGGAGGGGACTAAGGTGGAAAAAGGTCTGCAAACGTGGTTCGTTCCTGTGACAGGAAAATATAAATTCGACCTTTGTGGTGCTTCAGGGGGAGATCATTTGGGTCACAACACTCAAGGGGGGAAGGGTGCGAGGACACGAGGTAGTATTCGTCTCGTCAAAGGAACACAACTGACAGTTTTGGTGGGACAAAATAGACTTGATACAGGTGGTGGTGGTGGGGGTTCTTTTGTAGTGTATGCCTCTGATAACACTCCCATGGCAATCGCAGGGGGTGGGGGATCGGCCGATGCTGTGGATGGTGACCCGGGGCAAATTGGGAAATTGGGTAGCGTCAATTCAGGGTCTCTAGGGAAGGGAGGGAGGGTGTGCACGTCCGACAGTAGCATTCTTTCCCTGAGAGGGGTCGGAGGTGGAGGTGCTTTCACTGCAGACGGGCGCTGCTTTGAAGATTCAAGCTGCAACAAACCATGTCCCGGGGGGGATGGTGCTCTATCACGAGAAAGGAACCTGCCAAAACAAGTTGATTTTTATACTGAGATTATGGCGAACTGGCATTTTACTACGCTATTATTGCTATGTCATACCCTTCTCTACGTTAACGGGCAATCAAATTCAATCATTCTTCCGAGCAGTACCACAGTGACACCAACTTCCTCCAGTACTCCATCACTGAAAACGTCACCACCAGCTAAAGGAGTTGAAATAACGTTCAATATCAAAGACGGTGAATGCCAGCGAGTGTGTTGCGACGCGGCAGGCGGACACGTTAAAATGGTCTCATCATGTGCATCTCAGACCGCCAATAATAGCAGCTGCGAAGGATTCAAATCAGAGGAAAAAGAAGAGAAAGGTCACTGCCCGGGCGAAGCAGAGGACCTTTGCTCGAGTGCTTGTGATAACATAGCAGGGGACCGAGGTTCAGTTCATGGAACAAGTTTGGCTATTCTTGGTTTACTAGCTGTTGCAACTTTATTCAAGTTTAGTGTTTGCTAA

Transcript

aech_s0074.g3.t2

GTGAGCTCTAAATACAAACATTTGAAGATTGCCCTCAAAGATACTGTCTGGTCAAATTATGTGCTGAGGAGAGTTGAGATTTTGAACAATTGGATACAAAAGTAAAACACATCGCTATTGAACCAAACTTCAAAGTTATTTCATTCGACGGATCTTCTGCACAGATGTCATGGGATCCACTTCCAGGTCCTGCATTAGATGAAAGTACTAAGCTATTGCTGATGAAGCTTGATATCAGCAACCCTAAAGATATGACCACAGAGGATGTTAGCGAACAGGTGGAGTTGTCTGTTTCCTCTTTAGATCCAGCATCGCATTATGTGTTTGCATTGCTCTTAAAAAGGTGCTCGGCTACGATTGCTACGTCTATTACTTTAACAACTTTTGGACGAAGAACAGCGTGTTCTAAAATAAGCGTTCAAAATGCCCAAGCAACGAACGAACCAGCCTCGTCTTTGACTCATGGCACCAAAACAAATATAGAATTCAACGTCGGGTTTAACTTGGAAGATGACTATTATTATTATGAAGTTGGATCCAGTTATGAAGAAGTCTGTGTGGATAGCGAGTGGCAGCCTCCTCTCCCATCCTGTCACGCCATCAACCACTGCCCAGAGCTAATCATACCGAGTCATGGTCACCTTACACTGAAAGATAGACAAGAAGGATCCACTGCACATTATGTGTGCAAGAAAGGTTTTAAATTGGATGGAGCACAAGAACGCACCTGCAGAGCCGATGGGGAATGGGAAAAAGACGATCCACGTTGTCTTCCCATGAGCTGCGTTCAGCCACCAAGCATTGATCATGGTGAATTTGTACCTTGCAAGCACACGGGACATACTGACTTATATGACTCCTTGCAAGATCCTCGCGAGGGTTACTGCATACAACTAAGCTGCCAAGAACACTTTGTAGAAAGCTACAAGGTTGTCAAGGTTCCAAAAAATCTAAGATGGCAAAGTGATGGGAAGATTCCGAGGGGCGCAAGAGTTTGTAAGGATGGAGAATGGATCGGTTACACGGACACAAGTTGTAAACCAGCTGCACGATTACATCCTGAGGAAGAGACGTGGCATTCCAAGACTGGTATATTACAAAGATGGAAAAATGGAGATTGGGAATATGCGTCCACGCTTGATGGTAGTGAGAACATTCTCTGTTCAACTATGTCGTGTGTTTATGGTAATCTAGCTCGGTCGGTTGTCATTTCTGGGAGCCCCAATGGAGTCAGCGGCGTTGCGGTAACATGTCCGAAGATTCGTTTTGTAGATACGATAACACCATATGAAGGAACGCTGGAGGTATTGTGTAGCTGTGAAAATATTACATGTGTGAACCAAGGCCAATGCTTATTCAGTCAGAAGAATGAGAAATTTCAGTGTAAGTGCCAGCTTCCCTGGACAGGAGAAAGATGTGAGACAAAAATAGACATTCTCTTCAATTTCACTTCACTTGGAGCCGTCGGAAGTAAAGGACCGACCACAAACATCAAATACCAAGGCACTTCATTGGAGGGGACTAAGGTGGAAAAAGGTCTGCAAACGTGGTTCGTTCCTGTGACAGGAAAATATAAATTCGACCTTTGTGGTGCTTCAGGGGGAGATCATTTGGGTCACAACACTCAAGGGGGGAAGGGTGCGAGGACACGAGGTAGTATTCGTCTCGTCAAAGGAACACAACTGACAGTTTTGGTGGGACAAAATAGACTTGATACAGGTGGTGGTGGTGGGGGTTCTTTTGTAGTGTATGCCTCTGATAACACTCCCATGGCAATCGCAGGGGGTGGGGGATCGGCCGATGCTGTGGATGGTGACCCGGGGCAAATTGGGAAATTGGGTAGCGTCAATTCAGGGTCTCTAGGGAAGGGAGGGAGGGTGTGCACGTCCGACAGTAGCATTCTTTCCCTGAGAGGGGTCGGAGGTGGAGGTGCTTTCACTGCAGACGGGCGCTGCTTTGAAGATTCAAGCTGCAACAAACCATGTCCCGGGGGGGATGGTGCTCTATCACGAGAAAGGAACCTGCCAAAACAAGTTGATTTTTATACTGAGATTATGGCGAACTGGCATTTTACTACGCTATTATTGCTATGTCATACCCTTCTCTACGTTAACGGGCAATCAAATTCAATCATTCTTCCGAGCAGTACCACAGTGACACCAACTTCCTCCAGTACTCCATCACTGAAAACGTCACCACCAGCTAAAGGAGTTGAAATAACGTTCAATATCAAAGACGGTGAATGCCAGCGAGTGTGTTGCGACGCGGCAGGCGGACACGTTAAAATGGTCTCATCATGTGCATCTCAGACCGCCAATAATAGCAGCTGCGAAGGATTCAAATCAGAGGAAAAAGAAGAGAAAGGTCACTGCCCGGGCGAAGCAGAGGACCTTTGCTCGAGTGCTTGTGATAACATAGCAGGGGACCGAGGTTCAGTTCATGGAACAAGTTTGGCTATTCTTGGTTTACTAGCTGTTGCAACTTTATTCAAGTTTAGTGTTTGCTAAATGGAAAGTCAACACTACTTATGGCGGGCGACGAAATGAAAAATGCACGGGGCGAGAGCTTGCGCAATTCCTATCACATACTCATCAGTTCATAGTTCCCAATAGGCAGAACTTAGATAAACGGCCAGCTTCGTAGTAAATGCAAAATAATGTTTACCATTTGACTCTGAAAGCATCTTGAAGTCCTAGGTCTCCAAAACATAGATTTAAAATCCTTATAAACTTTATTGTGTTTATTTATTAtctctctctctctctctctctctctctctTCGCTTTCGCTCGTTCTTGGAAGAGCTGTCAATTTTGATTCGAGGAAAAGCGCAAGAGAACGTGTTCGAAGTGACCGCCGACAACTGAAGAAGGATTCAAGAAAAGAAAGTTTCCCTGACGAAAGAGTGCATAAATGGTTAAAGGAGAATATTAAGGAACTCGACAAACTCAGAGAATCAACCTCAGGCTCACCTTTTTTTCACACAATGCACGGGAAACTGCATCAAAAGGGTGTTTACTAAGATCACCTTTAAACTGGAAATTGGATTCAGCATTGAAGAGGATATTGCGACCTAAATCAGTGATGACCTTTTGGGAAGCCTGCCAGTCAACGTGTTGAGGTGGCCTTTATCGCAGTTGGTGTGGTGACAAACTGGCATTGGAGCAGCTGTTCCCCTCCTGTGGTCTTTATTGGATTGCTTCCCAGACGGTTTTAAAGCCAATACAAGAATTGCAAGCGACTCACTCCTTTTTTAATGTAAATGTTACGGAAGGAGTAGAAATACGTAAAAAAATATGGAAATATATTTAATTGCATTTTACATTTTGGCCAATTTGACGTTTCGGACGCCACGCCACATGCGTTTTCAAAAAGCGTTACAATTTGAAAGTACACCAGTACTATATTTAAGTGTTTCGACTGCATTAATACGATAATACTTTAATATTATTGTGTTCACCAAGATGAAACACCGTAACTTCTTTTATGAAATTTTTTTGAAGGTATGAATTTGATTGAGATTAAAGAAACGATCTTAACTGTCAAAAAGTTATCTTGAGAGAGTTTATTACTCGTTACTAATGTAGCAACAACCTCTCAATTCTTTGATTTGAATTTTGGGCGGATTTAATTAAGTTCCTGAATTAACAATGGGAGTTTCTAATAATTTTGAATGAAGTAGAACTGGATCCATTGAAACGACTATATTTAAAATGCGTTTATTAACTACAGTTaaaactctattaatcggacacctttgtgaccttcccaagcgtcccaaggtcattagagggtgttcgcttaataaggtttgcaaaatgtg

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P16109	P-selectin OS=Homo sapiens OX=9606 GN=SELP PE=1 SV=4

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002384 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF12810 all species →	Gly_rich	Glycine rich protein	Family	Interproscan
PF00084 all species →	Sushi	Sushi repeat (SCR repeat)	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000742 all species →	Domain	EGF-like domain	Interproscan
IPR000436 all species →	Domain	Sushi/SCR/CCP domain	Interproscan
IPR035976 all species →	Homologous_superfamily	Sushi/SCR/CCP superfamily	Interproscan
IPR050350 all species →	Family	Complement & Cell Adhesion Regulators	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR19325 all species →	COMPLEMENT COMPONENT-RELATED SUSHI DOMAIN-CONTAINING	Interproscan

Gene Ontology

No Gene Ontology signature was detected for aech_s0074.g3.t2. This gene does have a gene model — the search simply returned no hit.

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for aech_s0074.g3.t2.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.