Gene detail

Detailed information of aech_s0076.g4.t1 in Acropora echinata

Genomic Location: sc0000076_pilon:248277...251425
NR annotation: XP_029183977.2, uncharacterized protein LOC114952090 [Acropora millepora]

Gene Structure

More details in Jbrowse

Sequence

CDS

aech_s0076.g4.t1

ATGAGAATCGTCTACGACGCCTCCGCACGAGCAACACCCGATTCTCCTTCTTTGAATGTATGCTTACATCCAGGACCTGCATTACAGAATAGGCTTTGGGACATTCTTATCCAACAGAGAGGTTACCCAGTGGTCCTAGCGGGTGACATAAAGAAGGCGTTTCTACAAATACGGATCCACGAAAGCGAGAGAGATGCACTTCGGTTCCACTGGAGACCAAGTCACTTGTCAGAGGTAGAAACCTACCGATTTACACGAGTATTGTTTGGACTTGCCCCTTCCCCATTCTTGTTAGGAGGCGTCCTCGAATGCCATTTAGACGCGTGGGCCAAGAAGTACCCGGAAGAAACTGAACATCTTCGTCGAAGCTTCTACGTTGACGACCTTCTCTCAGGCGGGCAGGATGTTCAACAAGCACGGACGCGAAAGGAAATAGCGACGGAGATAATGAATGATGCTTCGTTCGAACTTCACAAATGGCATTCCAACGAGCCTCAGCTGGAGGGTAGACAGCCCTCCACATCCTACGAAGAGCAGTCATACCCCAAACAGCAGCTACAAGCCCAGTCAAGCGAGTCGAAGTTATTAGGGGTCAAGTGGAACATGGAAAACGACACGATTGCTGTACTGTTCCCAGAAGCAGCGAAATCCCAAGCGTCAGAAGAGGAAGCGACAACCATTAAGGAAGTGCTTAACCTAGCACAACAACAACACAACCAAGACCGGAACGAATTCGACGAACTCCTTGAGCGAAATAACCTTCGTCGAGCCCTTCGTGCTCATGCTTGGGTGCTACGGTTCACCACCCGTCGGGAGCGCAGAGGTCCTCTAACAAGTCAGGACACACAAGAGGTGAGAGAATGGTGGATCAAGAGAGTGCAGACCCAAGATATGCAGAAGCCTGAATTTGAACAGACCAGACAAATCTTAAACCTGGTTCCGAATGAAGATGGGGTACTCGAATGCCATGGGCGTATTCAAGGGAAGCACCCCGTTTACCTTCCAGCGGATGCGACTTTCACGAGGAAGCTTGTTCAGCGGATTCACGCTGAAACACTCCATGGAGGCGTGTCCCTAACCATGGCAGCCATTCGCGAGAACTACTGGATCCCAACGCTGAGGAAGTTAGTTAAGTCCGCAAGATCAACATGTTGGGGCTGTAAGCGGTTCCGTGCTTTGCCAGTGAGAGCGCCACCCCCTGGACTGCTACCCAAAGAGCGTACTGACATCCGAGGAGCTTTCGAGGTCATCGGGACTGACTTCGCGGGTCCAATCTTGTACAAGTTAAGAAACAAAAAAGAAGGGAAAGCCTATATGGTAATTTTCTCTTGCAGTTTGTCAAGGGCTGTACATTTGGAACTAGTCACGAACCTAGAAACTACTACATTCTTGCCATGTCTGAAACGGCTAATAGCAAGACGGGGACGCCCGAGTGTGATCTATTCGGACAACGGAAGCACGTTTGTCAAAGCGGCCAAATGGCTGAAACAAGTAAGAAGAGATGAAGAGTTCAACGGTTTCCTGGAATCCCATGACATTAAGTGGAGATTCAACTTGAGTCGCGCGCCATGGTGGGGCGGTCAATTCGAACGGCTGATCGGCATTGTGAAAGCGACGATGTACAAGGTTATCGGGAGAGCCACCCTTTCCTGGGATGAACTAAGCGAAGTATTGTTGGATGTTGAGACCCAAGTAAATCGCCGCCCTCTCAGCTACGTTGAAGACGACTTAGAGTTGCCTATCCTGACACCTGCCTCCTTTTTGTTCCAGCGCTCCCCCCAGCTCCCTGAGCAGCCAGCCTGGCAGATCAACAACAAGGATTTGCGGAGAAGAGCCAAATTTTTGAAGTCCTGCAAGGATCAGTTATGGAACAGGTGGCAACGGGAATACTTAACTTCCTTGCGAGAGCGTCACAATCTTGTCCACAAAGAAGCCAAGTATCAAGTCAAAGTTGGAGATGCCGTAATTGTACGGTCTGAGAAGAAGAATCGAGGCAAGTGGCCTCTAGCCATTGTCGAGGCCATTTATCCGGGCCCTGACGCACACACGCGGGCTGTTCAGCTGAGGACCAGTAAGGGCGTCATCCAGCGACCAGTTCAACATCTGTATCCTTTAGAATTGCACAGTGAGCCCAGGGTTGCCCAGCCGGCATTGGAACGGCAACTGAACGCGAACGCCACCTCCTTCAGACCAAGAAGAGCGGCAGCGAACACAGCAGCAGCGAGAATTGCGCAGATTGCCGAGGAAGAAGAAAGCAAGCAGTTGTGA

Transcript

aech_s0076.g4.t1

GAAGGAGCGATCGAGAAAGCACCACCAGTCTCGCAGTCAAAGGAATTTTACATTCCCCACAAGGGCTTGGTTCGTAAGACAGCCGAAACCACGAAGATGAGAATCGTCTACGACGCCTCCGCACGAGCAACACCCGATTCTCCTTCTTTGAATGTATGCTTACATCCAGGACCTGCATTACAGAATAGGCTTTGGGACATTCTTATCCAACAGAGAGGTTACCCAGTGGTCCTAGCGGGTGACATAAAGAAGGCGTTTCTACAAATACGGATCCACGAAAGCGAGAGAGATGCACTTCGGTTCCACTGGAGACCAAGTCACTTGTCAGAGGTAGAAACCTACCGATTTACACGAGTATTGTTTGGACTTGCCCCTTCCCCATTCTTGTTAGGAGGCGTCCTCGAATGCCATTTAGACGCGTGGGCCAAGAAGTACCCGGAAGAAACTGAACATCTTCGTCGAAGCTTCTACGTTGACGACCTTCTCTCAGGCGGGCAGGATGTTCAACAAGCACGGACGCGAAAGGAAATAGCGACGGAGATAATGAATGATGCTTCGTTCGAACTTCACAAATGGCATTCCAACGAGCCTCAGCTGGAGGGTAGACAGCCCTCCACATCCTACGAAGAGCAGTCATACCCCAAACAGCAGCTACAAGCCCAGTCAAGCGAGTCGAAGTTATTAGGGGTCAAGTGGAACATGGAAAACGACACGATTGCTGTACTGTTCCCAGAAGCAGCGAAATCCCAAGCGTCAGAAGAGGAAGCGACAACCATTAAGGAAGTGCTTAACCTAGCACAACAACAACACAACCAAGACCGGAACGAATTCGACGAACTCCTTGAGCGAAATAACCTTCGTCGAGCCCTTCGTGCTCATGCTTGGGTGCTACGGTTCACCACCCGTCGGGAGCGCAGAGGTCCTCTAACAAGTCAGGACACACAAGAGGTGAGAGAATGGTGGATCAAGAGAGTGCAGACCCAAGATATGCAGAAGCCTGAATTTGAACAGACCAGACAAATCTTAAACCTGGTTCCGAATGAAGATGGGGTACTCGAATGCCATGGGCGTATTCAAGGGAAGCACCCCGTTTACCTTCCAGCGGATGCGACTTTCACGAGGAAGCTTGTTCAGCGGATTCACGCTGAAACACTCCATGGAGGCGTGTCCCTAACCATGGCAGCCATTCGCGAGAACTACTGGATCCCAACGCTGAGGAAGTTAGTTAAGTCCGCAAGATCAACATGTTGGGGCTGTAAGCGGTTCCGTGCTTTGCCAGTGAGAGCGCCACCCCCTGGACTGCTACCCAAAGAGCGTACTGACATCCGAGGAGCTTTCGAGGTCATCGGGACTGACTTCGCGGGTCCAATCTTGTACAAGTTAAGAAACAAAAAAGAAGGGAAAGCCTATATGGTAATTTTCTCTTGCAGTTTGTCAAGGGCTGTACATTTGGAACTAGTCACGAACCTAGAAACTACTACATTCTTGCCATGTCTGAAACGGCTAATAGCAAGACGGGGACGCCCGAGTGTGATCTATTCGGACAACGGAAGCACGTTTGTCAAAGCGGCCAAATGGCTGAAACAAGTAAGAAGAGATGAAGAGTTCAACGGTTTCCTGGAATCCCATGACATTAAGTGGAGATTCAACTTGAGTCGCGCGCCATGGTGGGGCGGTCAATTCGAACGGCTGATCGGCATTGTGAAAGCGACGATGTACAAGGTTATCGGGAGAGCCACCCTTTCCTGGGATGAACTAAGCGAAGTATTGTTGGATGTTGAGACCCAAGTAAATCGCCGCCCTCTCAGCTACGTTGAAGACGACTTAGAGTTGCCTATCCTGACACCTGCCTCCTTTTTGTTCCAGCGCTCCCCCCAGCTCCCTGAGCAGCCAGCCTGGCAGATCAACAACAAGGATTTGCGGAGAAGAGCCAAATTTTTGAAGTCCTGCAAGGATCAGTTATGGAACAGGTGGCAACGGGAATACTTAACTTCCTTGCGAGAGCGTCACAATCTTGTCCACAAAGAAGCCAAGTATCAAGTCAAAGTTGGAGATGCCGTAATTGTACGGTCTGAGAAGAAGAATCGAGGCAAGTGGCCTCTAGCCATTGTCGAGGCCATTTATCCGGGCCCTGACGCACACACGCGGGCTGTTCAGCTGAGGACCAGTAAGGGCGTCATCCAGCGACCAGTTCAACATCTGTATCCTTTAGAATTGCACAGTGAGCCCAGGGTTGCCCAGCCGGCATTGGAACGGCAACTGAACGCGAACGCCACCTCCTTCAGACCAAGAAGAGCGGCAGCGAACACAGCAGCAGCGAGAATTGCGCAGATTGCCGAGGAAGAAGAAAGCAAGCAGTTGTGAACGTTACTGAATGAGTGACTGATCACGATTATTTTCTCCTTTATTGCGTGCACCTTCTCATCTAA

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF18701	DUF5641	Family of unknown function (DUF5641)	Domain	Interproscan
PF00665	rve	Integrase core domain	Domain	Interproscan
PF17921	Integrase_H2C2	Integrase zinc binding domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR012337	Homologous_superfamily	Ribonuclease H-like superfamily	Interproscan
IPR036397	Homologous_superfamily	Ribonuclease H superfamily	Interproscan
IPR040676	Domain	Domain of unknown function DUF5641	Interproscan
IPR001584	Domain	Integrase, catalytic core	Interproscan
IPR043502	Homologous_superfamily	DNA/RNA polymerase superfamily	Interproscan
IPR043128	Homologous_superfamily	Reverse transcriptase/Diguanylate cyclase domain	Interproscan
IPR041588	Domain	Integrase zinc-binding domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR22955	RETROTRANSPOSON	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0015074	Biological Process	DNA integration	Interproscan