Gene detail

Detailed information of aech_s0084.g92.t1 in Acropora echinata

Genomic Location: sc0000084_pilon:1400046...1402727
NR annotation: XP_029204217.2, uncharacterized protein LOC114968259 [Acropora millepora]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

aech_s0084.g92.t1

GTAAGACCCTCGTTCCCAGGGTAGCAGAGCCATCTTGAGGGCAACGTCACCATTCAAGGAAAGATGGCGTCCGGTGTTGAACATAGCGAACTGAAGAAAATTGTAAATATGATGGGTGATGAAACCAGTTGCCCTGTTTGCTTGGAGGAATTTAAAGAACCGAAATGCCTTCCAAGTTGTGCACATAACGTTTGCGAGCGCTGTTTAGAAAACATGGTACGAAAAGGTTCTTATACAATTTCTTGTCCGCAGTGTCGAGAGGAGTCGTTTCTTCCACCTACAGGCGTGTCGTCGTTTCCAACAAATCATCTGTTGTTGCGACTAATAGAAAACACTCCTGCGAGGAAAGAGAAAAAGGAACTAACTGAGGCGTTGAACGTTTGTTATGAGCGAGTAAAAGCAGCCGAAAATGCACTTCAAGAAATGGAAGAATGCTATGAGAATGCAACCGACCAAAGGGACAAAATAAGAGGCGAAATAAATAAATTGGCCGATGATCTTATTCAGACAATTAGCAAACAACGGAATTCTCTGCTTTGCCGGCTCGATGACTTTCTTGCTGAGCATTTTGATGAAAATTCTGTGGAAAAACAACAGGTAAGCATGCGTTCTTATCTTCGAGAAGCCAAGACTTACCTGCACGGGGCAAATGAAATTCTTCAGCAAGGTGAAATTGGAAAAATAATCGAATCTAAAATCGTGGTTTTGGAAAGGTTGAAAGAAATAAGTTCAACAATTGATGGGAGAACTCTCGAAGCCAAAAAGCTTTCTTATCAAGTAGACATTGATTTTAGCCACTCTCCATTTCCTGAGTTACGTGAAAGTTGTGTTGAAATGTTAGGCAGATTGTCGTTGTCGGCAAGTAACTTTGGTAGTGCTATGGCTAATGCAACAGGCTTTATTGACTACAGTAGATGTGAGGAAGAATCTCGGACTATTGTTACAGGTTTTTCCACTTTTGCCATGGCAGTATCAAATGTGTCAGGTGACATCGCTTTACTTGATGAGGAAGATCGACGTGTATATATTTTCAATAATTCCTTTGGAGACATTGTGAGTGAATTTTGTGTCAATTATGGTGACTTGTGGGATGTAACATTTTCCAAGGATGATGAAATAATTGTGTTAAGTCGTGAATGTAATCGACTGCTGCATTATGATCGTGAAGGTACATTCATTAAAAAGCATGTGAAGACACCAAATGCTCAAGTGAAATTCACAAGGATTTCCACAGATGCTGATGGCAGGTTTCTTATCACATCCAGTCCCAGGGATTGTTGTGACGACCCTGAAGAATTAGTAGAGCCTTGTGTTCTTGTTTACAGCTCTGATAGGAAATTTCTATTCAGCTTTGGTGTAGATAGGCTTCACTGTCCTCAAGATGTTGTCTTTCATCAAGGAAAGTTCTTTGTGACAGATGGTGACTTAGAGTGTGTGCAAGTATTCAATAGTTGGGGTAAATTCCTGTTTGAATTTGGGAGTAGAGTTCTTTTAGACCCAATCGGTATAACTGTTGATCCAATGAATAATGTGGTTCTCATCTGTGACAGTAGCAGTAATGCAATAGTGGTCTTTAAGCCTAATGGCGAACTCGTATCTGAAATTGAAACTTCTGAAGAACCTTTACATGTTGCACTGTCTTTGAATGCAAGAAGCTTAATTGTCTGTTTTCATAACACACCATTTCTAAAAGTTCTTTCCAACAAAGAGTGATCCTTATTTTTGATGTTTGTTTACACCACTGTGGCCTTTGGTAATGTAATACATTGGTGAGATAACCTTTTGGTACCTTATAATGAGGTAAAACTATTATTGTAATACTGTCCAACCACCATCATGTGGACTTGTGAGATCTGGGCTCAATagagagctttggatgtgagaatgagaatgaaaataagtgaaggtttgtttgcttggtcatagtctgcatgagtagttgGAATGAAGATACAGTAATCTTTGTCAGGCCTTTCCCTTTTTCCTCATCAAAACTGATTCATGCCAGTACTATATGGTATGACTTAGAGGGGCACAAATTCATTAGTCATTGAGGACTATTACATGTTACCCTCTCAAAGTGTCTCAAAGTCTCTATTCTATTCTACAACTGTATGGGTGTTTAGAGTGAGCTAATGAGGGGTCTCTTGGGGCTAGAGGGATATGTAAGTTTTCATAAGTTATACTAGAGCCACATAAGGCGTCTCTGTCAACCCAATGGTTACTTTTCTTTCAATTTCCGCTGTGCTGTGATGTTGTACTGCTCTCTACATcagtgttccctttttttttatcagcacagcagctcagagtttttcaaactatttaagtactttcaggcatcattgcttattttgtgtgctcagtacattacacggaatagagatttacctcattttagttcacttcataaagatggttatttcctgaattctttatgaatataaggaccagagtttaaaatgaatgtaaatgaatttttttctttagccaggtgaatttgtaacaattccaggccatttgaagcagtaataggtgatgttagagagggtaaattttactggttaccacctgaatatgaggaaacTGTTCTACATCCTCCATCAATAAGAGAGATGCCAAAACCTATTTCTGTATTTTGTGATTATTCAGATTAGTTGCATATAAACACCTAGTATGTTG

Protein

Gene family

Gene family	Subfamily
Ubiquitin Family	E3\|E3 activity RING\|RING

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13445	zf-RING_UBOX	RING-type zinc-finger	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR027370	Domain	Zinc finger, RING-type, eukaryotic	Interproscan
IPR011042	Homologous_superfamily	Six-bladed beta-propeller, TolB-like	Interproscan
IPR047153	Family	TRIM45/56/19	Interproscan
IPR001841	Domain	Zinc finger, RING-type	Interproscan
IPR013083	Homologous_superfamily	Zinc finger, RING/FYVE/PHD-type	Interproscan
IPR017907	Conserved_site	Zinc finger, RING-type, conserved site	Interproscan
IPR001258	Repeat	NHL repeat	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR25462	BONUS, ISOFORM C-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan