Gene detail

Detailed information of aech_s0110.g6.t4 in Acropora echinata

Genomic Location: sc0000110_pilon:86876...105454
NR annotation: XP_029191910.2, RING finger protein 10-like [Acropora millepora]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

aech_s0110.g6.t4

GGCGCTGAACACAGCAGCCAAGTTATTCCCTTTCGCCCTCAAGTTAGCGTCTGCGAAGTCCCTGCCAGGGACAACAATACAATCGCACAAGGGAGCATAAGTTCCCTTGTTGTCTTTTTGTTAAGTTTCACTTCAAAACTACCCAACAAGTTGAATTTTTCGATAAGAAATCATCGAATCTATTTTTGATTTCATTATGGCTTTTTGAATTGTTTACGCCATGTTCATGCTCGAGTTGGTAGAAAAAATCTTTTCTCCTTTTGGAGTGAACGTTCCTTCTGCATCTGTTTTCAATTCAAAACTTCATCGAACAGAAATTTGGGCGGTGGATGACCGAGTCTGGACGAGAAAATATGGAGGGAAAAACGAATGTTGTTCCTTCTGCGAGTGGGCGAGAACCAGCACCGAAAAGTAAAGGACAGTCAAGGGGACGAAACCGTAGAGGTCATTATGATAATTATGGAAGATATCCTAGCCAGGAAAACTACAGACAACAAAGGAAGGATGGTTACAATCAGCCTCAAAGACGGGGAGCAGTACCTGATCGGAGACCAGCACCCAGGGGTGGTTTTAATCGCAGCTTGGATTTTAAGAAGGGAACTAGACCTGCAGTGGTTCGCGATTGTCCACTCGTTGGCCCTGGTACTGGCTCCAAAAAGTATGGCAGCTCCTTAAACCACCTTTTGAATTTCAAGTACACCCCCAGGGAAAAGCCGCTTGTGTACCATCCAAGGAGCAACAACAAAAGATACACAACATTCAACAAAGAACAGTTCATTCAAGCCAACTTTCAGTTTGTAGTCTGTGATTCTGGTGATTACACAGTTCATGCCATGGATCCCGATGTACTTGTGGAGTGGGATTCCATTGAGCAAGTGAGAATCTTCAGCCATGAAGTTCCATCATGTCCAATCTGCTTGTACCCACCTGTGGCAGCCAAGATGACAAGGTGTGGTCACATTTACTGCTGGTCTTGTATTCTTCATTATCTTAGTCTGACTGACAAACCATGGCACAAATGTCCCATTTGTTATGAAGCTGTTCATAAGAAGGCCTTAAAAAGTGTTGTTGCTCTGGAGTCCCATTCATTTTCAGTGGAAGACACCATCACTATGCGGCTTATGAAGAGAGCAAAGATTGTTACACCCGAAGAGACTGCACTGGATGCACAACATATGGAAGCCAGAAGTGAACAGTCGGAAGAAGTTTGTTACATTGAAGTGGCAATGGCTGAAGTCAGGGCACGTAGGGAGAGTTTAAGTGATTCTAAATGTTATGAAGAAGTGAGAAGTCTAATGGAGGATGTAAAACTTCATGAAGAGGATTCAAACAGAAATCAAGTAACAAACTGGAAAGTGCTGTCTCCAAGTGCAATTCAAGATGTTGGTGAATACGCTCCAGCATTTTCTGATGACGAGGACCACTTTGACAGGGAGGTACAAGAACCTGACAAATCAACTTATCAACTTCCAAAAGCCACAGAAGAGCCATATGAAAGCACAGAGTTACCAGAGAAAACCCATGAGTTTCATGAACATGCCTGGGAGAGTGTGTCAGGCGATTCAAGCTGTGAACCAGCAAGGCCAATATCACCTGGTCCTACGTCAACACAGTATTATTACTTCTATCAAGCTGATGATGGTCAAAACATATTTTTGAGTTCCTTAAATACCCGTTGCCTAATAAAGGAATATGGAGGTTTGGAGTACTGTCCTGACACAATCACAGCAAAGATTCTAGAGATGGATGCCCGCTCTCAAAGTGAGGATCTCCGCAAACGGTATCGATGCCTTAGCCATCTTCCCCTGACATGTGAGTTTGTCTTTTGTGAACTGGACATCAAGCCACCCATCATATCACAGGCGACATTAAACTTCTTCAAAGGTGAGATACAACAGAGGAAACAACAACGGCAGAAAAAGTTGCGAATGGAGAAAAGAAGAGAGCAGAAAGCTATTTCCAATGTGAGCTTGCCCGACTTCTCAAGCAGATCATCCGgttttgccaGTAGAGACGCAGTGCCTGTTCCAGAACATCTGGACCTCGGCAGTGATTTTGAATTCCCGGCGCAAACAGGACAGCTGGCCATCTCACCGCCCAGCAACGCAGCACCGAGTCCTTTCATGCAGTTTGCCGCCTCAATGCCCAATCATGATGACGGTTTAGCTGCCATGGCTGAAACAGAAGGAGTCAATGTGCAGAGTGACGTAATACCCAGCCCTCCATCCTTTGCCCAGGCTCTGAGGTCCAAGAAGGCAACTGAGACATTTCGGAAACGACAGGATATAGccagcccgtagacagtaaaacgctcccatgact

Protein

Uniprot

Uniprot term	Description
Q08E13	E3 ubiquitin-protein ligase RNF10 OS=Bos taurus OX=9913 GN=RNF10 PE=2 SV=1
Q3UIW5	E3 ubiquitin-protein ligase RNF10 OS=Mus musculus OX=10090 GN=Rnf10 PE=2 SV=2
Q5XI59	E3 ubiquitin-protein ligase RNF10 OS=Rattus norvegicus OX=10116 GN=Rnf10 PE=2 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00097	zf-C3HC4	Zinc finger, C3HC4 type (RING finger)	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR013083	Homologous_superfamily	Zinc finger, RING/FYVE/PHD-type	Interproscan
IPR001841	Domain	Zinc finger, RING-type	Interproscan
IPR017907	Conserved_site	Zinc finger, RING-type, conserved site	Interproscan
IPR039739	Family	RING-finger protein MAG2/RNF10	Interproscan
IPR018957	Domain	Zinc finger, C3HC4 RING-type	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12983	RING FINGER 10 FAMILY MEMBER	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000976	Molecular Function	transcription cis-regulatory region binding	Interproscan
GO:0045944	Biological Process	positive regulation of transcription by RNA polymerase II	Interproscan
GO:0046872	Molecular Function	metal ion binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K26979	RNF10; E3 ubiquitin-protein ligase RNF10	EC:2.3.2.27	Ubiquitin system	ko04121	deepkoala