Gene detail

Detailed information of aech_s0117.g11.t1 in Acropora echinata

Genomic Location: sc0000117_pilon:416730...422345
NR annotation: XP_044172482.1, uncharacterized protein LOC114973101 [Acropora millepora]

Gene Structure

More details in Jbrowse

Sequence

CDS

aech_s0117.g11.t1

atggagattaagtctttcgaatccttcgcagcaacagtcattgagcaaattttccgttcgcctgctgtagaagatccagctgctgaaataaagaagcgtttggtagcaagcaaaggttatttttacattttgtttctggataactttgagtgttttattgaagagactaacaacccgcaggaggatcaaccttcgacagcAGCAGCCCCATGTCGTGATTATAGAGAAAGAGTTGTAAAGTTTATCGGTGAAATTGCTAGACGCCCGACAAACATCAAGTTTCTTGTTACTTCGTCAGAAAAAGGTTGGTTTCCTAGGCTAGCGATGGAAACGATACATTTGAATCCGTTTGATAGAGACGAATCATCTAGGCTCTTGGAAAAAGTACGATGTGCCGACAAAATATCTGTCGAAGAATGTGAAGAACTTTGCAAGatttgcagtggtattccgctggtactccacactttgatctcgtcgcaagaggatctgaACTGTTTTGCAAAATCATCTCCGGAAGAGAGAACAATTTTTCTCCGGAAGATGAAAACAGTGCCTAAAGAAGATAAAATAGAATTTTGCCTAAACCATTGCTTCCAAAGACTGACACCCAAAGCACAACTGACTTTACTAAGTTTGTGTCTTTACAAGGGTTTGTTTACTCCAGATAAAGCAGCAAAAATCTTTGGCTCTCCTGAGTCAAGCGAACATAATCTCAAAACTATTGTCTTGGAATTGGGACGGTGCAATCTCTTACACCTACAGAAATTCCAAGATACAAACAAATATACATTTCTCACGGTCATTCGAGAACATTTCAAACTCAAGGCAAAGCAAGAATATCGCGTAGAGATCCAACATGCTCGTGGTCTGCTGATCGATTACCTCATTTCTTTCTTGAAAGAGACTTTCAAGGTGTTCTTGGGCAAAAATTCAGTGAAATCGGCTATCGAGGATTTTTCGGCAGAAAAAGAGAACGTGATGCAGCTGGTTGAATGGATCGACAAGGGTGAAATGGATGAAGAACGAGTCAAGAAATGTATCGACGTCTTTAATGTGGCAGGAGAGATGCTTGCGAAGATGATGGGAAAGTTGAATTATAGAAATGTTTACGAATCTTTGGCTAAGAAAAGTGAAACAATGGGAGACCAGCGGAGACTGGCTGAATGTCTCACTTCCCTTGGGATCATGGAAATCTTCAACTGCATATCCGCAAACGGTCTAAGCGATGAAGCTATTACGCTAGCTCGACCTAATTTGGAGAAAGCTCATTGGATCCAGACTTGCCTTCGAGTCAACAAGGGTAACAGCCGTGCCCAGTGCCTCGCTAAGCTTGGTCGCTGTCGAGTGAAAAGTGGTGAGACAGAGCGAGGAAAAGCCATGATCGAGGAGGCGATACGTATCAGAGAGGCCGCAGTCGAAACACCTGATGATCATGAAGAAGAAGGCGGCGAGAATGTCTGTCATGTCATGCGCGGTGCAACATATAACGACAAGGCAGttgctctttcttttgaaaaccatcatcgagaggctgtgaaaattagaaaaactcaagtgatgccgatttacagagaaagattgggtgaccatcctttcactgccaccatcctcaacaatatgtccaataatcatcgcgacctgggagaatttgagcccgctgaggagtacgctgaagaagctctacgtattcggcgcgagttattggcggaccacagtgacaccaccaaatctttgtttgattttgGAGTGGCACTAAAAGCAAACGGAAAGTTTAGAGAAGCAAGAGATTTTCTTGAACAATGTAAGACTATGCAGGAGAAAGTGGTGAATGATGAAACCCTCGAGCAAAAaacaattccagttccatggaagaaactacctacaaaaacatggtacagaaatgggcacaaaagtggctgtggcctttgccaacatcttcactgccaaaatagagaacgagacccaagacagagtcctactgaaccgctggtggggaaaagatacattgacgatgtcttctccctgtggaacgcaatcagagacaaaatagaaagctttatttga

Transcript

aech_s0117.g11.t1

cgtaacgataacagacatatccttgttgcgtacatcgactgcatggagattaagtctttcgaatccttcgcagcaacagtcattgagcaaattttccgttcgcctgctgtagaagatccagctgctgaaataaagaagcgtttggtagcaagcaaaggttatttttacattttgtttctggataactttgagtgttttattgaagagactaacaacccgcaggaggatcaaccttcgacagcAGCAGCCCCATGTCGTGATTATAGAGAAAGAGTTGTAAAGTTTATCGGTGAAATTGCTAGACGCCCGACAAACATCAAGTTTCTTGTTACTTCGTCAGAAAAAGGTTGGTTTCCTAGGCTAGCGATGGAAACGATACATTTGAATCCGTTTGATAGAGACGAATCATCTAGGCTCTTGGAAAAAGTACGATGTGCCGACAAAATATCTGTCGAAGAATGTGAAGAACTTTGCAAGatttgcagtggtattccgctggtactccacactttgatctcgtcgcaagaggatctgaACTGTTTTGCAAAATCATCTCCGGAAGAGAGAACAATTTTTCTCCGGAAGATGAAAACAGTGCCTAAAGAAGATAAAATAGAATTTTGCCTAAACCATTGCTTCCAAAGACTGACACCCAAAGCACAACTGACTTTACTAAGTTTGTGTCTTTACAAGGGTTTGTTTACTCCAGATAAAGCAGCAAAAATCTTTGGCTCTCCTGAGTCAAGCGAACATAATCTCAAAACTATTGTCTTGGAATTGGGACGGTGCAATCTCTTACACCTACAGAAATTCCAAGATACAAACAAATATACATTTCTCACGGTCATTCGAGAACATTTCAAACTCAAGGCAAAGCAAGAATATCGCGTAGAGATCCAACATGCTCGTGGTCTGCTGATCGATTACCTCATTTCTTTCTTGAAAGAGACTTTCAAGGTGTTCTTGGGCAAAAATTCAGTGAAATCGGCTATCGAGGATTTTTCGGCAGAAAAAGAGAACGTGATGCAGCTGGTTGAATGGATCGACAAGGGTGAAATGGATGAAGAACGAGTCAAGAAATGTATCGACGTCTTTAATGTGGCAGGAGAGATGCTTGCGAAGATGATGGGAAAGTTGAATTATAGAAATGTTTACGAATCTTTGGCTAAGAAAAGTGAAACAATGGGAGACCAGCGGAGACTGGCTGAATGTCTCACTTCCCTTGGGATCATGGAAATCTTCAACTGCATATCCGCAAACGGTCTAAGCGATGAAGCTATTACGCTAGCTCGACCTAATTTGGAGAAAGCTCATTGGATCCAGACTTGCCTTCGAGTCAACAAGGGTAACAGCCGTGCCCAGTGCCTCGCTAAGCTTGGTCGCTGTCGAGTGAAAAGTGGTGAGACAGAGCGAGGAAAAGCCATGATCGAGGAGGCGATACGTATCAGAGAGGCCGCAGTCGAAACACCTGATGATCATGAAGAAGAAGGCGGCGAGAATGTCTGTCATGTCATGCGCGGTGCAACATATAACGACAAGGCAGttgctctttcttttgaaaaccatcatcgagaggctgtgaaaattagaaaaactcaagtgatgccgatttacagagaaagattgggtgaccatcctttcactgccaccatcctcaacaatatgtccaataatcatcgcgacctgggagaatttgagcccgctgaggagtacgctgaagaagctctacgtattcggcgcgagttattggcggaccacagtgacaccaccaaatctttgtttgattttgGAGTGGCACTAAAAGCAAACGGAAAGTTTAGAGAAGCAAGAGATTTTCTTGAACAATGTAAGACTATGCAGGAGAAAGTGGTGAATGATGAAACCCTCGAGCAAAAaacaattccagttccatggaagaaactacctacaaaaacatggtacagaaatgggcacaaaagtggctgtggcctttgccaacatcttcactgccaaaatagagaacgagacccaagacagagtcctactgaaccgctggtggggaaaagatacattgacgatgtcttctccctgtggaacgcaatcagagacaaaatagaaagctttatttgaaaggtcagtaaaggattttgacagca

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13424	TPR_12	Tetratricopeptide repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR019734	Repeat	Tetratricopeptide repeat	Interproscan
IPR051787	Family	Effector and Ciliary Development-Associated Protein	Interproscan
IPR011990	Homologous_superfamily	Tetratricopeptide-like helical domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45641	TETRATRICOPEPTIDE REPEAT PROTEIN (AFU_ORTHOLOGUE AFUA_6G03870)	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K12646	RIGI, DDX58; ATP-dependent RNA helicase DDX58	EC:5.6.2.6	Pattern recognition receptors	ko04054	deepkoala