Gene detail

Detailed information of aech_s0126.g60.t1 in Acropora echinata

Genomic Location: sc0000126_pilon:1168234...1182039
NR annotation: XP_029208768.2, translation factor GUF1 homolog, mitochondrial-like [Acropora millepora]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

aech_s0126.g60.t1

TTTAAAGAAAATTAATGATGATACTTTCTTCGCTGTTTTACAGATTCAGATGGAAAAGAAAAACGAGGAAGAGTATTAGAGTATAGCTATGCAATTTTTGAATAAAACAGGAATTGGCGTATCGGCTGTTTTTTCTAAATCGCCAGAATCTCACATACGCTCTCTGGTTGGTTTGTGCAAGAGAACAGACAAATTCATTGCTGCAGAGTTAACGGAAAGCATGCATTTAAGAAGAACTCGTTGCTATAAACTCTTGGGAAAGGGAAGCGACTGCAAATCCAAGCACAACCTTTGGAGGGCATGCAGTCAATCGACTCGCCCAGGAATGTCCAAAAAGGAGAAAATTAACATGTCAGATTTTCCGGTGTCAAGGATAAAGAACTTCAGTATCATTGCTCACATTGACCATGGCAAAAGCACACTCGCTGACAGACTGCTTGAAATGACAGGAACAATATCAAGAAACACTGACAACAAGCAAGTCCTAGATAAACTTCAAGTTGAAAGGGAAAGAGGGATAACAGTCAAGGCCCAAACAGCATCACTCTTTTATCATTACAAAGGGGAAACATATTTGTTAAATCTTATTGATACACCGAGATATGAAGTTCTGGATGTGGGAATCATGTATCCAGGAGAAGTATCGACTGGGGCTCTATATGCGGGTCAAGTCGGTTTTGTATCCTGTGGGATAAGGAACAGTAAAGATGCTCAAATAGGGGACACGTTTTTCCATCCTCACTCACCAGTGGAAGCCCTGTCAGGATTTAAGCCCATGAAACCAACGGTTTTTGCTGGTATTTACCCTGTGGATCAGACTGAACACATCTATTTGCGATCTGCCATTGAAAAACTCACTCTGAATGATGCCAGTGTTACTATACACGCTGATAGCTGTTTAGCTCTTGGTCAAGGCTGGCGGCTTGGCTTCCTTGGTTTGCTTCACATGGATGTTTTCAAGCAGAGATTAGAGCAGGAATACAACACAAAAGTGATTGTAACTTCGCCGAATGTTCCTTACAAGGCAATTTTAGCTGACAAAGAAGGAAAAGAAATTGAAGTCCTTAATCCTTTGGAACTTCCAGATCCCTCGTTGGTGAAGTTCTATATGGAGCCTTTTGTCATGGGAACAGTAGTTTTCCCTGAGGAATGCATGGGGAAGATGCTCACTCTTTGCGAGAGCAGGCGCGGTGAGCAACAGGAAGTGTTGTATATAGATGAGTCGCGTGTTATGATCAAATACTTGTTACCACTGAGCGAAATCATCGTGGATTTCTATGACGAGCTCAAATCGCAGTCCTCAGGTTATGCAAGCTTTGATTATGAAGACGAAGGCTACCGAGAGACAAACATAGTCAGGATGGATATTTTAATCAACGGGACGGTGGTTGATGCGTTAAGCTGCATAGTTCATACAGACAAAGCGGTGCAATCTGGGAGGTCACTTTGCGCCAAGCTCAAAAATGTTATTCCAAAGCAACTTTTTGAGGTGGTGATTCAAGCCTCTATTCGAGGAAGAATTACAGCAAGGGAAACGATAAGAGCCCTGAGAAAGGACGTCACAGCAAAATGTTACGGTGGTGACGTAACTAGGAAAATGAAGCTACTTCAGAAGCAGAAAGAAGGGAAAAAACGAATGAAGCGAATAGGAAAAGTGGACGTTCCCCATGAAGCATTTCTGGCAATTCTGAAAAGATGACACGTCACAGTAAATTGAGACACAATTGCAAAACGATTCTATGTGTAGCGGAACTGCACAGTGTGGATTCGTTTTTATCCAAAAATGAAGGATTACAATTCCAAAACGTAGCTCTTACCTTTTTTTAGAAGCAGTAGGATAAAAAACAATCTCCAGTAGCTATAAAATGCGAGAGTGCATCAGTTCAACTCTTGAAACGGTAAAAGCCTAATACCACAGCAAATCATTCTATTATTATCTGTAATAATTGCATGATTGAAGATATTCGTGTACTTAAATTGCCTTGAATTCTATTTAAACTGTCCGTCTGACGACCCTCCCGGCACTCTCGGTACAAGGGAAAaccaaggacttcccaaatacacccccctttcctaagaaaatcacacgtacacaaacattggccgcgtgcaagtgcctctttcaatgagactgcagccatttattttaatcctaggttgagaaattgcttggttgctatgattgtaatattatcagaattacctcaggctatcagaaaggcgttcgggatcttacacaaacaaacatcctttatttgtcctaaagcctttcTGTGCAAAAAAGATTTTTGTACTAA

Protein

Uniprot

Uniprot term	Description
B3RXR7	Translation factor GUF1 homolog, mitochondrial OS=Trichoplax adhaerens OX=10228 GN=TRIADDRAFT_56304 PE=3 SV=1
A6QLJ3	Translation factor GUF1, mitochondrial OS=Bos taurus OX=9913 GN=GUF1 PE=2 SV=1
Q8N442	Translation factor GUF1, mitochondrial OS=Homo sapiens OX=9606 GN=GUF1 PE=1 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00679	EFG_C	Elongation factor G C-terminus	Domain	Interproscan
PF00009	GTP_EFTU	Elongation factor Tu GTP binding domain	Domain	Interproscan
PF06421	LepA_C	GTP-binding protein LepA C-terminus	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000640	Domain	Elongation factor EFG, domain V-like	Interproscan
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR031157	Conserved_site	Tr-type G domain, conserved site	Interproscan
IPR000795	Domain	Translational (tr)-type GTP-binding domain	Interproscan
IPR035647	Homologous_superfamily	EF-G domain III/V-like	Interproscan
IPR035654	Domain	Elongation factor 4, domain IV	Interproscan
IPR038363	Homologous_superfamily	LepA, C-terminal domain superfamily	Interproscan
IPR006297	Family	Elongation factor 4	Interproscan
IPR013842	Domain	GTP-binding protein LepA, C-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR43512	TRANSLATION FACTOR GUF1-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003924	Molecular Function	GTPase activity	Interproscan
GO:0005525	Molecular Function	GTP binding	Interproscan
GO:0005739	Cellular Component	mitochondrion	Interproscan
GO:0043022	Molecular Function	ribosome binding	Interproscan
GO:0045727	Biological Process	positive regulation of translation	Interproscan
GO:0097177	Molecular Function	mitochondrial ribosome binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K21594	GUF1; translation factor GUF1, mitochondrial	EC:3.6.5.-	Mitochondrial biogenesis	ko03029	deepkoala