Gene detail

Detailed information of aech_s0129.g3.t2 in Acropora echinata

Genomic Location: sc0000129_pilon:118016...131562
NR annotation: XP_029208412.1, putative acyl-coenzyme A oxidase 3.2, peroxisomal [Acropora millepora]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

aech_s0129.g3.t2

CTTATTTATTGTGATGTTTTATTAATGCTAAATTTACAGTTGTTCTCCTCATGTTTTCTGCAGGGAGACGATTACAATCGGCCGTTTCTAAAGTTAGATTTCAACTATCTGTTTTGCACTCGCGGAGCGGATTATCTCATACTTTCCCAGGCGATGTGACTCATTCACGGAGCTTACCATTGCGCAACACTCGTCCCCTTTCAAGTTCACAAGTGCGAATGGACGTACAGAAACTTAGAGAAGAGTGGGGGAATCCATCATTTGATGTTTTGCAAATGACACACCTGCTTGATCATGACAATCATGACAAGAGAGCTCAATTTCGTAAAATTCTATCCGAGGATCCTCTAATGACACCGAAGTACAACATTTCTGTGGACGAAGAGAGGGAGTTGGCGTTGCAAAGACTAAAGAAACTTTGTGACCAGGGATTCATTTCGGTGCTAGACTTCAAGAATAACCCTTTATGGATTTTCGCCGCTCATGAACTTGTTTCTGTTGTTGATGCGGCAATGGCAACAAAGATGACTGTTCAGTTCAACCTTTTTGGTGGTACTGTTTTGAAATTGGGAACGGAAAGACACCATGAAAGGTTTTTAAAGGGTATTGATACACTTGATGATGTGGGATGCTTTGGGCTCACAGAACTTGGTTATGGAAACAATGCAGTGCAGATGGAAACAACAGCTACATATGACAAATCAACAAAGGAATTTATTGTCCATACTCCTAACCCCATGGCACAGAAATACTGGATCACAAATGGGGCCTGCCATGCCCACCATATTATAGTCTTTTCCCAACTTTACATTGATGGAGTCAATCAAGGTATTCATGGTATTCTTGTACCTATTCGAGACAAGAACCTGAAGGTCGTGCCAGGAGTTGAGATTCATGATATGGGACACAAGATGGGTCTCAATGGAGTGGATAATGCCAAATTTTTTTTCAAAAATGTTCGTGTGCCACGAGAGAATCTGCTGAACCTTTATTCTGATGTTGCTGAGGATGGAACATACACCACAACTGTTGAAGGAAGCATCAGAAAGCGTTTCCTGACTGTTGCTGACCAACTTCTGTCTGGTCGGCTCTGTATTGCCAGTATGTCTCAAGGTGCAGCGAAAGCCTGCATTGCCATTGCCATCCGTTATTCAGCTACTCGTCTGACTGTGGGTCCTGATGGAAAATCTGACACTCCCATTCTCAAATACCAACTCCAACAGAATGCGTTGATGCCTCTATTGGCAACCACATATGCAATAGACTTTGCTATGCATTATGTTAAGGATCACTGGGCATTTCAGGCAAGTGATGGTTCTGAACACGCCGATGTGGTAACCATGTGCTGTGTTATCAAGGCCATCTCTGGTTGGCACGTAGCGGAGACAGCTGCACTTTGTCGTGAGAGATGTGGAGGGCAAGGCTACCTTTCATGTAACAGATTTGGCGGTGGTATTGCTGGTTCCCACTCCTCCATGACAGCTGAAGGGGATAACTCCGTTTTAATGCAAAAAGTTGCAACCGAGAGGTTAATGGTTCTCAAGCCAACACTGCTAGAAGTTGCCGCAACGTACATACCAAGCTTTGTGAGTCGTATGTTTAGCTTGGCGAACCTGACCAATCAAAATTACCTTCAGTCTCTAATCGAGTCACGAGAAAAGGATCTCTTTTTGCAGTTGGGTTTAAAAATGACGAAAGCAGGAAAGAAGGGAAGGTTTGAAATGTGGATGTACAAAGAGCAAGACCTAGTCCAAGCAGCATCGCGGGCGTATGGTGAGCGTCTCATAAGTGAGTGCTTCGGTAATAGCATTGATACAGCTGACCCAGGATTAAAGTCAGTGTTAAAGAAACTTCATCATCTTTATCAAATGAATGTCATTAAAAGAGATCTGGCTTACTTCACAACTTCTGGGCTTATGTCCACGTCAACTGGTGCACAAGTTGGAAAAGCTCATGCTGACCTTTGTCGAGAGGTAGCACCAGAGGCTTTGGCACTCTGCGACGCGTTTGGAATTTCGGAGGAATTGCTTAGTGCTCCAATTGCAAGAGACTGGATCAAGTATAACTCCATTGACAACAAAGGAGAAGTCTGTGGTTTGGAGTTTTAAATGGACATTTTGTGGCGTAAACGCTATTTTGTTGGTTCATCTTGTTTCAAGCTATCAAATGAATGATTTTGAGTATGTGGGGAATATGAATTAATGAGAAAAAAAGGTGTGTTGCGAAGATATTGCATTTCAAACTCTACAAAAAAGAAGACTGGTTAAGGGACCGTTCTGATGCTTGTGCCCAAATTTATTGACTCATTTTGTATTCTTAAATTTCAAAGTCATTCCGTCATAAGGAGCTCTTTCAACAGGCTTAATTATTTTTGTGGGGACTCTATTTGCTTACCCCTGCCCGCTGTCGAAGTCGTAGTGATAAATATATTACTTACATAAGCTTGATCGTCCAAAGGGTTTTCGTCATTTTTAAATATAGAGTTCTTGTAGTCAGGAGATGGCATCGTTTAAAATGATCAATGTTTGTTACCAAATCAATAAAGAGATACTTGAAGACGTTTCGGCTAAACTCGTAACCCTTTATCAGATACTACAAAGCTTGATTTTGTTACGCTGTTACAAAAACGTTGTACCAGCGATATGCGGTGGCCAAACATAAGGGGTATTGTGGGGTGTCTGGAAAACCCGAATAGCAAATAGTCGCGAATAGCGGATATGAGTGTAGTCTCGAATAGGGGTGAATAGTGCCGAATAGTTGCAGATCGTACCAAATAGGGCACTCTTCGCAATCAACCTTGCAACATCGT

Protein

Uniprot

Uniprot term	Description
Q9LMI7	Putative acyl-coenzyme A oxidase 3.2, peroxisomal OS=Arabidopsis thaliana OX=3702 GN=ACX3.2 PE=3 SV=1
O64894	Acyl-coenzyme A oxidase, peroxisomal OS=Cucurbita maxima OX=3661 GN=Acx PE=1 SV=1
O65201	Acyl-coenzyme A oxidase 2, peroxisomal OS=Arabidopsis thaliana OX=3702 GN=ACX2 PE=1 SV=2

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01756	ACOX	Acyl-CoA oxidase	Family	Interproscan
PF02770	Acyl-CoA_dh_M	Acyl-CoA dehydrogenase, middle domain	Domain	Interproscan
PF00441	Acyl-CoA_dh_1	Acyl-CoA dehydrogenase, C-terminal domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR012258	Family	Acyl-CoA oxidase	Interproscan
IPR002655	Domain	Acyl-CoA oxidase, C-terminal	Interproscan
IPR036250	Homologous_superfamily	Acyl-CoA dehydrogenase-like, C-terminal	Interproscan
IPR046373	Homologous_superfamily	Acyl-CoA oxidase/dehydrogenase, middle domain superfamily	Interproscan
IPR009100	Homologous_superfamily	Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily	Interproscan
IPR006091	Domain	Acyl-CoA oxidase/dehydrogenase, middle domain	Interproscan
IPR009075	Domain	Acyl-CoA dehydrogenase/oxidase, C-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10909	ELECTRON TRANSPORT OXIDOREDUCTASE	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003997	Molecular Function	acyl-CoA oxidase activity	Interproscan
GO:0005777	Cellular Component	peroxisome	Interproscan
GO:0006631	Biological Process	fatty acid metabolic process	Interproscan
GO:0071949	Molecular Function	FAD binding	Interproscan
GO:0005504	Molecular Function	fatty acid binding	Interproscan
GO:0033540	Biological Process	fatty acid beta-oxidation using acyl-CoA oxidase	Interproscan
GO:0050660	Molecular Function	flavin adenine dinucleotide binding	Interproscan
GO:0055088	Biological Process	lipid homeostasis	Interproscan
GO:0006635	Biological Process	fatty acid beta-oxidation	Interproscan
GO:0016627	Molecular Function	oxidoreductase activity, acting on the CH-CH group of donors	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K00232	E1.3.3.6, ACOX1, ACOX3; acyl-CoA oxidase	EC:1.3.3.6	Alcoholic liver disease	ko04936	deepkoala