Gene detail

Detailed information of aech_s0148.g11.t1 in Acropora echinata

Genomic Location: sc0000148_pilon:320936...322940
NR annotation: XP_015769276.1, PREDICTED: chromodomain-helicase-DNA-binding protein 2-like [Acropora digitifera]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

aech_s0148.g11.t1

GTTGGCCAGCGCGTTTGGATTTTTACTTTTCCAAGCCAAGGAAAGGTTTATCCAAGAAATTGCGTCACATGTGGAGTGGCCCGTTCAGAATCTGTACTCAGTTATCGCCTGTCCATTACCAACTGCGAACGTGTGATAATCTCCTCGTAGCCACCGTCGTCCATGCCAACCGTATGAAGCCTTTTTACGACCCCGCTGATCGTCCCATCTTACCACAGATCGACGATGACCCGAACGCACCTAACCTTTTGGAATCCGACCTTCCTGATGTCAGTTTTGAGCAACCTTCTCACCCGGTAGCAAAAGCAATTTCGCCGGGCAGCGCCTCAGACACAAGCCCAAATACCATCACCGACGATAGTTCCCCTCCTGACGATAACAATGAAGATAATAGTGAGACTGATAATCTTGACTCTGAGGTCGTTGCACCCCGTAACCATGTTGCTGTTGACTCCCTAGATTTGAGCCAAGACTCTGATGTTTACGCAGTCGAAAAGATCGTCAAGAAGCGACAACGCAATGGCAAGGTTCAGTACTTGGTTAAATGGGCTGGATTCCCTCCATCACAAAGCACCTGGGAGCCAGAGGAACACATCCTCGATGCTCGCTTGTTGGAAGAATTTCATAGAGAGACCAAGTAACTGTTATTCTGTATTACTCGTGTACATATGCATTCTGAACCACTCCTATTTCCCAGTAGTAACGGGCGTTTCCACAGAAACACCGGATCCCTTCGATTTTGACGCTAGCAGAAAACGTGTGACCTATTATCCTGACTCGCTTATGCTTTCTCATAATCCGCACGCCGTTATTTTCTACCGTAACACTAAACCTCTGCATGTGTATATTGATCTGTGCACACCACTTATAGGACGCGATTTTACCATCAATAACACCTGCGAAAGACAGGCTACATTTTTACAAACTTTGCTGCTTCAATTACGTACGATACAGAAAAGCACGAAGCGAGTACTTTCAGCTCATGGCTACACCTCCTTGATAGAGTGCGAATCATATCTTCGGCGTTATTATTAATATTCGACCGGCCTAACGCCTACCATGACCTGCCTGTATGCTTATAAAAAGTCACTCCAATTATGTAAAGCATAGGCCCTAACCCATTGTTCTCGTATTTCTCCGCATGAACGATCATGGCTACAGGGGAGCAAACGCGGCAGACGGTCTCTACCTTGGCAGTGTACCGCGGGTCTCGGAAATCTGGTACGATATTTCTACCAATTGGGAAGAGGAAACTGTGATTCTAATGATCTCTCGGATGTTTGGAATGTACTAAAAAAGGTCTCAGCCTCAATGGCTCTTCTACACGACGAAATTCGTACGCTTAATGGCAAAACAATCAATGGTTTAATTTTGGCTTTGCGCGGTATGGATAGTGCCTTTCGCTGTTGGCGCGTCCAGATAAATTCTTTTGCATCTCGGGATAACTGTCACTATAATAACTTTATGGAATTTCTTTCCAAATTTTCCCTTGAAACTACTCGTGCGTTTTCCTCATTGCTCCGTTTTCTCGAAATTAGCGATGTCCTACAGCAATCTCGGCAATTGCTCAAAAAACCTGCGATTGGATTAAACGACCTTCCGTCTTTTGTTTCCTCCGAAATTCAAGTTCGCCTTCACACGATTCCGCCGTTGGTCCGTACTGCGGAGGGCCTTGACTCAGGTTTTCCGTTGTTATTGGACCCAATGATAGACTACGACTACGATATTTCACGTGCATTAGGCGTCCGCATGTTATTCACCGTTCCAGTGCTTTCTAAGGATTTCTCAACATGCACCATCGAGTACTTGTCACCCATAAAGTATAATGTTTCCGGCACATGCTACACGGGTCCCATTACTCGTGATCAGTTAGCACTCCTTCGTTGTGAGAATTCGGAATTTCTTATACACGAAAACCTTCTTGCAAAATGTTCACTCTCCGATTATACTTTCGTTTGCCCAGACCATATTCTTCGATTGGTCAGCGACACCACTTGCTTTGGTC

Protein

Uniprot

Uniprot term	Description
Q8VDS3	Chromobox protein homolog 7 OS=Mus musculus OX=10090 GN=Cbx7 PE=1 SV=1
P60889	Chromobox protein homolog 7 OS=Rattus norvegicus OX=10116 GN=Cbx7 PE=2 SV=1
O95931	Chromobox protein homolog 7 OS=Homo sapiens OX=9606 GN=CBX7 PE=1 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00385	Chromo	Chromo (CHRromatin Organisation MOdifier) domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR017984	Domain	Chromo domain subgroup	Interproscan
IPR023779	Conserved_site	Chromo domain, conserved site	Interproscan
IPR000953	Domain	Chromo/chromo shadow domain	Interproscan
IPR023780	Domain	Chromo domain	Interproscan
IPR016197	Homologous_superfamily	Chromo-like domain superfamily	Interproscan
IPR043531	Family	E3 SUMO-protein ligase CBX4	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46727	E3 SUMO-PROTEIN LIGASE CBX4	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000122	Biological Process	negative regulation of transcription by RNA polymerase II	Interproscan
GO:0016925	Biological Process	protein sumoylation	Interproscan
GO:0032183	Molecular Function	SUMO binding	Interproscan
GO:0035102	Cellular Component	PRC1 complex	Interproscan
GO:0045892	Biological Process	negative regulation of DNA-templated transcription	Interproscan
GO:0061665	Molecular Function	SUMO ligase activity	Interproscan