Gene detail

Detailed information of aech_s0183.g5.t1 in Acropora echinata

Genomic Location: sc0000183_pilon:166406...190829
NR annotation: PFX15956.1, RCC1 domain-containing protein 1 [Stylophora pistillata]

Gene Structure

More details in Jbrowse

Sequence

CDS

aech_s0183.g5.t1

atgaaagacatcaaggaggcgatcgctagctgggtgcctcctaccttcgaggaggaatgggatttggatcctacaatcgcagctaaaatcatgcgaccaatggacgaccatccaggagagcttgagctaatggagaatgaacagagtggtgctaaggaggggagtagcgggacaacagataacctactgatcgataagaccgtaacacttgactacaatcgtaacaggcgtaatctaagcatggcctgggtcgacgtcaaaaaggcctacgactctgttgatcacaagtggcttaatgagatcgtgaaagtacaccggtttccttcgtggatctgtagagtgatacagaatcttagtgctttttggaacaccaggattacaacgagtacgaagcaagggcgtgaaacatctgggccgattagatttactaaaggcctcccacagggggatgccctgtgccctcgtctttttacgttatgtctaaaccctgttgcctggctgctctcagcttctaagggatattgcctatccaaacccctggagaccaaaaatacgcacttgttaaacgtggacgacctcaatgtagttggtgcgtccgaggcaaagctcaacagtgttttacgagctactagtactgctatgcaagacatcggtctgcagtggaaccccaaaaagtgtaatgtcatccacgttaggaggggaaaggaagttgaggatgccgcagacctcaagttggatgaggcaaccctggtgaagaaccttgaagctgggtccagttacaaattcctgtgtgtgaaggaagctacattgcaagacgaaaagctggcactcacggtggcagctaaggtgtatatgcacaggctgtcagtgatctggacgagccctctatctgatgCTAAGAACTGCGACCTTGGTGATAAAGAAGATTCGTGGATTACGTCTACGTTCGTGCTGGGACTCAAAGATCCACATTCAAAGGAAAGTCTGATGGAGAGAGAACAAAGTTTAGAGATAACGTTGCAAGCTGCTCGTATAGCCGAAATAAGCAAACAGCACATGAAGAGCTTAAAGGAAGAGAACAACCGAGGTGAGAATGTGGATCTATTGGGCAGAAAAGGTCAGACGTCCCAATGGGAAGCGCGTTACGGGAATTGTGGTATTCGGCATGCACCAGCTTCGTGTCCTGCTGCAGGAAGGCGCTGTCACAAGTGTAGGAAAATGAACCATTTTTCAAGGATGTGTCGTGACCCAGAGGGGCAAAAGAAGCAGGTAAATACTCTTGATGATTGTGACTCTGACACTGAGGTTATGTTTATTGGGGCAATGAGTGTAGAAAACAAGGACTGGGTTGAAACTGTCAGTTTTGGAAACGTCCAAGAGTTGTTCAAAATAGATACCAGGGCCCAGTGCAATGTCTTACCTAAAGCTGCTTATGACAAGATCATGACAAAACCTTTGCAATCCTCCTCAGCAAAGTTAGAGAGTTACACCAAAACGGGCATTCAACCTGTTGGAAAGTGTGAGTTGCCTTGTTGGaggtcaagaggtcaagtagtagcacctgctgctgcatatttggaagagtgcaagtcaaaggGGTACCCCCAGTCAAATGGTCGGTCGGAGAGAACAGTTCAAACAGTCAAGTCAATTCTTGAGAAAGCTGACGACCCACGCAAAGCCCTCATTTCATATCGGAATTCTCCTTTGGAGGACGTGAACTTGTCACCCTCGCAAATGTTTATGGGAAGGCGTTTGAGGACCCAAATTCCAATGACCAAAGAAATGTTAAAGCCCCAGCTGTATGATCCTGAAGAAGTCTTGACTAAGCTAAAAGAAAGACAAAGAAAGCAGAAGCTGCAGCATGACCAAACAGCGAAGGAACTGCCACCGTTGAGGAATGGCGAGCTTGTAAGAGTTCGGGAATGCAACAAGTTGAAGCCTGATACAGTTACAGAGATTCTTCCGTCACCTAGATCCTACAAGGTTGAAACAGAGCGGAGAGAGTACCGAAGAAATCGCCACTTGCTAAGAATGGAAGAGCTCAAGGCATCAGAGTTTACATGCACAGCCCCATCTGGAGAAGACCTAACCGACACTGAAGTTGAGATGTCTGGTGCAGGAGCCCTGCAGAGTCCTAGGTCAACACCAGTCAAAATGTCTATGGCTACTACCACACCGTCCGGTAAGACTGTTAGAGAACCTTTAAGGTTCAAAGACTATGTCAAGTTTTAG

Transcript

aech_s0183.g5.t1

CACCATGGAAACCGTGAtgtttcgatgatattgaagctgcaatcagtttttggcgtattctctgggaatcgagtgggactgggaacaaagatgctaactggatgaaagacatcaaggaggcgatcgctagctgggtgcctcctaccttcgaggaggaatgggatttggatcctacaatcgcagctaaaatcatgcgaccaatggacgaccatccaggagagcttgagctaatggagaatgaacagagtggtgctaaggaggggagtagcgggacaacagataacctactgatcgataagaccgtaacacttgactacaatcgtaacaggcgtaatctaagcatggcctgggtcgacgtcaaaaaggcctacgactctgttgatcacaagtggcttaatgagatcgtgaaagtacaccggtttccttcgtggatctgtagagtgatacagaatcttagtgctttttggaacaccaggattacaacgagtacgaagcaagggcgtgaaacatctgggccgattagatttactaaaggcctcccacagggggatgccctgtgccctcgtctttttacgttatgtctaaaccctgttgcctggctgctctcagcttctaagggatattgcctatccaaacccctggagaccaaaaatacgcacttgttaaacgtggacgacctcaatgtagttggtgcgtccgaggcaaagctcaacagtgttttacgagctactagtactgctatgcaagacatcggtctgcagtggaaccccaaaaagtgtaatgtcatccacgttaggaggggaaaggaagttgaggatgccgcagacctcaagttggatgaggcaaccctggtgaagaaccttgaagctgggtccagttacaaattcctgtgtgtgaaggaagctacattgcaagacgaaaagctggcactcacggtggcagctaaggtgtatatgcacaggctgtcagtgatctggacgagccctctatctgatgCTAAGAACTGCGACCTTGGTGATAAAGAAGATTCGTGGATTACGTCTACGTTCGTGCTGGGACTCAAAGATCCACATTCAAAGGAAAGTCTGATGGAGAGAGAACAAAGTTTAGAGATAACGTTGCAAGCTGCTCGTATAGCCGAAATAAGCAAACAGCACATGAAGAGCTTAAAGGAAGAGAACAACCGAGGTGAGAATGTGGATCTATTGGGCAGAAAAGGTCAGACGTCCCAATGGGAAGCGCGTTACGGGAATTGTGGTATTCGGCATGCACCAGCTTCGTGTCCTGCTGCAGGAAGGCGCTGTCACAAGTGTAGGAAAATGAACCATTTTTCAAGGATGTGTCGTGACCCAGAGGGGCAAAAGAAGCAGGTAAATACTCTTGATGATTGTGACTCTGACACTGAGGTTATGTTTATTGGGGCAATGAGTGTAGAAAACAAGGACTGGGTTGAAACTGTCAGTTTTGGAAACGTCCAAGAGTTGTTCAAAATAGATACCAGGGCCCAGTGCAATGTCTTACCTAAAGCTGCTTATGACAAGATCATGACAAAACCTTTGCAATCCTCCTCAGCAAAGTTAGAGAGTTACACCAAAACGGGCATTCAACCTGTTGGAAAGTGTGAGTTGCCTTGTTGGaggtcaagaggtcaagtagtagcacctgctgctgcatatttggaagagtgcaagtcaaaggGGTACCCCCAGTCAAATGGTCGGTCGGAGAGAACAGTTCAAACAGTCAAGTCAATTCTTGAGAAAGCTGACGACCCACGCAAAGCCCTCATTTCATATCGGAATTCTCCTTTGGAGGACGTGAACTTGTCACCCTCGCAAATGTTTATGGGAAGGCGTTTGAGGACCCAAATTCCAATGACCAAAGAAATGTTAAAGCCCCAGCTGTATGATCCTGAAGAAGTCTTGACTAAGCTAAAAGAAAGACAAAGAAAGCAGAAGCTGCAGCATGACCAAACAGCGAAGGAACTGCCACCGTTGAGGAATGGCGAGCTTGTAAGAGTTCGGGAATGCAACAAGTTGAAGCCTGATACAGTTACAGAGATTCTTCCGTCACCTAGATCCTACAAGGTTGAAACAGAGCGGAGAGAGTACCGAAGAAATCGCCACTTGCTAAGAATGGAAGAGCTCAAGGCATCAGAGTTTACATGCACAGCCCCATCTGGAGAAGACCTAACCGACACTGAAGTTGAGATGTCTGGTGCAGGAGCCCTGCAGAGTCCTAGGTCAACACCAGTCAAAATGTCTATGGCTACTACCACACCGTCCGGTAAGACTGTTAGAGAACCTTTAAGGTTCAAAGACTATGTCAAGTTTTAGCCATATTTTGAACAGTTTTATAACATTTCACAAAGTCTTGTGTTCAATTTAGAGAGAGAAACACTACTCCAGTGGTCACGTTGTCTGAAGTTTTGCTTGCCACCGTTTCATAATTCTGTAATTTTTCAGTTGTTTCCTTTTGTGTGCTTGCTTTTCTTCCGCCCaaaaaaaaaagaaaaaaaaa

Protein

Uniprot

Uniprot term	Description
Q03278	Retrovirus-related Pol polyprotein from type-1 retrotransposable element R2 (Fragment) OS=Nasonia vitripennis OX=7425 PE=4 SV=2

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00078	RVT_1	Reverse transcriptase (RNA-dependent DNA polymerase)	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036397	Homologous_superfamily	Ribonuclease H superfamily	Interproscan
IPR000477	Domain	Reverse transcriptase domain	Interproscan
IPR043502	Homologous_superfamily	DNA/RNA polymerase superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR35450	REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003676	Molecular Function	nucleic acid binding	Interproscan