Genomic Location: sc0000277_pilon:88027...111955
NR annotation: XP_029203485.2, phenolphthiocerol/phthiocerol polyketide synthase subunit C-like [Acropora millepora]
Species Acropora echinata · all data for this species · gene families
| CDS |
| aech_s0277.g6.t1 |
| Transcript |
| aech_s0277.g6.t1 |
| Protein |
| aech_s0277.g6.t1 |
| UniProt accession | Description |
|---|---|
| Q7TXL8 | Phenolphthiocerol/phthiocerol polyketide synthase subunit C OS=Mycobacterium bovis (strain ATCC BAA-935 / AF2122/97) OX=233413 GN=ppsC PE=1 SV=1 |
| P96202 | Phenolphthiocerol/phthiocerol polyketide synthase subunit C OS=Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv) OX=83332 GN=ppsC PE=1 SV=2 |
| A0R1E8 | Mycocerosic acid synthase-like polyketide synthase OS=Mycolicibacterium smegmatis (strain ATCC 700084 / mc(2)155) OX=246196 GN=pks5 PE=1 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0000672 (this species only) · gene tree & orthology |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF00975 all species → | Thioesterase | Thioesterase domain | Domain | Interproscan |
| PF14765 all species → | PS-DH | Polyketide synthase dehydratase N-terminal domain | Domain | Interproscan |
| PF02801 all species → | Ketoacyl-synt_C | Beta-ketoacyl synthase, C-terminal domain | Domain | Interproscan |
| PF00550 all species → | PP-binding | Phosphopantetheine attachment site | Domain | Interproscan |
| PF16197 all species → | KAsynt_C_assoc | Ketoacyl-synthetase C-terminal extension | Family | Interproscan |
| PF00109 all species → | ketoacyl-synt | Beta-ketoacyl synthase, N-terminal domain | Domain | Interproscan |
| PF02460 all species → | Patched | Patched family | Family | Interproscan |
| PF00698 all species → | Acyl_transf_1 | Acyl transferase domain | Domain | Interproscan |
| PF21089 all species → | PKS_DH_N | Polyketide synthase dehydratase domain | Domain | Interproscan |
| PF08659 all species → | KR | KR domain | Family | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR016039 all species → | Homologous_superfamily | Thiolase-like | Interproscan |
| IPR018201 all species → | Active_site | Beta-ketoacyl synthase, active site | Interproscan |
| IPR011032 all species → | Homologous_superfamily | GroES-like superfamily | Interproscan |
| IPR014043 all species → | Domain | Acyl transferase | Interproscan |
| IPR016035 all species → | Homologous_superfamily | Acyl transferase/acyl hydrolase/lysophospholipase | Interproscan |
| IPR001031 all species → | Domain | Thioesterase | Interproscan |
| IPR049551 all species → | Domain | Polyketide synthase, dehydratase domain, C-terminal | Interproscan |
| IPR014031 all species → | Domain | Beta-ketoacyl synthase, C-terminal | Interproscan |
| IPR000731 all species → | Domain | Sterol-sensing domain | Interproscan |
| IPR009081 all species → | Domain | Phosphopantetheine binding ACP domain | Interproscan |
| IPR036291 all species → | Homologous_superfamily | NAD(P)-binding domain superfamily | Interproscan |
| IPR032821 all species → | Domain | Polyketide synthase, C-terminal extension | Interproscan |
| IPR014030 all species → | Domain | Beta-ketoacyl synthase, N-terminal | Interproscan |
| IPR003392 all species → | Family | Protein patched/dispatched | Interproscan |
| IPR036736 all species → | Homologous_superfamily | ACP-like superfamily | Interproscan |
| IPR050091 all species → | Family | Polyketide and Nonribosomal Peptide Biosynthesis Enzymes | Interproscan |
| IPR001227 all species → | Homologous_superfamily | Acyl transferase domain superfamily | Interproscan |
| IPR020841 all species → | Domain | Polyketide synthase, beta-ketoacyl synthase domain | Interproscan |
| IPR029058 all species → | Homologous_superfamily | Alpha/Beta hydrolase fold | Interproscan |
| IPR049900 all species → | Domain | Polyketide/metazoan fatty acid synthase, dehydratase domain | Interproscan |
| IPR016036 all species → | Homologous_superfamily | Malonyl-CoA ACP transacylase, ACP-binding | Interproscan |
| IPR020807 all species → | Domain | Polyketide synthase, dehydratase domain | Interproscan |
| IPR049552 all species → | Domain | Polyketide synthase, dehydratase domain, N-terminal | Interproscan |
| IPR013968 all species → | Domain | Polyketide synthase, ketoreductase domain | Interproscan |
| IPR042104 all species → | Homologous_superfamily | Polyketide synthase, dehydratase domain superfamily | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR43775 all species → | FATTY ACID SYNTHASE | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0016746 all species → | Molecular Function | acyltransferase activity | Interproscan |
| GO:0004315 all species → | Molecular Function | 3-oxoacyl-[acyl-carrier-protein] synthase activity | Interproscan |
| GO:0006633 all species → | Biological Process | fatty acid biosynthetic process | Interproscan |
| GO:0009058 all species → | Biological Process | biosynthetic process | Interproscan |
| GO:0016020 all species → | Cellular Component | membrane | Interproscan |
| GO:0004312 all species → | Molecular Function | fatty acid synthase activity | Interproscan |
| GO:0016740 all species → | Molecular Function | transferase activity | Interproscan |
aech_s0277.g6.t1.Genes whose expression across the transcriptome samples of Acropora echinata tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.
No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.
Whether this gene can be visualised in the single-cell atlases of Acropora echinata, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.
No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.
Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.
No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.
Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.
| Analysis | What it does | Status | |
|---|---|---|---|
| Primer design | Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed. | template found | open → |
| BLAST | Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start. | template found | open → |
| Expression heatmap | Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it. | no expression matrix | – |
| Gene family / orthogroup | Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue. | open → | |
| Gene set analysis | Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it. | open → |