Gene detail

Detailed information of aech_s0437.g4.t1 in Acropora echinata

Genomic Location: sc0000437_pilon:86526...88773
NR annotation: XP_044167821.1, LOW QUALITY PROTEIN: uncharacterized protein LOC114949699 [Acropora millepora]

Gene Structure

More details in Jbrowse

Sequence

CDS

aech_s0437.g4.t1

atgctactttcagccgatagcgacatctctgttgtggtgacgttgctggaaagagagtacaaaagacgagctaagttcagaccgcttctgtggagcaaatgcacgaagctacaacttgaaaaagtctatacaaggctaagagttgtttccagacggaaagcaggaagttcggagataggggtagatgacatctttgggtcgagtgagaaagataatgatccattagtgcttgtagaggggagtccaggaattggcaaaagcaccttctgtctcaaacttgctcacgactgggcgaatggtgaaatgtctcgtaattttccaattttcaaacttgtatttttgctcaaatgcagggacatgaagggaggcatagtggaagacatttttgagcaacttctgcccgaagatctcaaggaaaaaaccaaagaactccttgtcaattttcttggggacttaaataagcagaaacaaattctcatcgttttggatggcttggatgagctcccagaaaagttggaagatcatgtgaacaaagtccttggcagaaaaaaattctctttatgctacgtgttggccacaacccgccaagagaaaggaattcataccagagaacaatttcaatttgacacttgccttgcgattgaaggatttagtgaagagaattcctttgagtacataaggaaacatttcagGAATATTGGTACAGAGCATTCATCCAAGGGAGAAAGGCTCATAGAAGAAATAAAACAGAACCCTTTATTAGGTGACCTCCAAAGCAACCCTTTAAATTTACTCCTCCTTTGCGTTGTTTACGAGGACCATGAAGGAAGTCTACCGTCCTCCATTACTGATCTTTACCAAACCATTGTGAGGTGCCTTTTGAGAAGATACTGTGCCAAAGAAAAATTAAAGGCTTCTGAAAAGGACGAGGACTTAGACAAACAATTTGAAATAGCCATCCTTGCGCTTGGGGAGCTCGCTTGGAAATGTCTGTTGAATAATCGTCTTAGTTTTTACGAAGACGAATTAAAAGAGTTGGAAAGAAGCAATGAGAACATTGTGGCTCGTAGACTCGGCCTTGTTTACAAGGAGGAAAGTTTGAAGCGATTGAAACCACGTCATGTGTACAGCTTTCTTCTTAAAACGTTTCAAGAGTATTTGGCTGCGTCATACATCGCCTTTAACTTACGAGCAAGCGTGTTTCATGTGCTCGACGAGCAAGTGAGACTTCATGATGTGACGAATAAATTTCGAAGAGTGTTTTTATTTGTGTGTGGACTACTGCGCGAAGAAgcaagtattctcttcacgcagattggtgatacgcttcagaaagactgggactggtccaaatgcagcaaaggtgcagcaagtttcttctctgaaagttggaaagaaagtggaaaggctgaaagaatggcgaatactctttgttcatttttaccctttcgtcgggttctacacgtaagcgaacaccaccacgaggagttgatcaatgttctagaggcgtgcgcagggttttccaaggtgcagacacccgctgaagttcacgttgcaattcctcctggtttacaagttgttaaaaacatccagcgtgttttggcgggggttccaaatgtgaaaacgcttatcttaccagctgtaagtgacagtattgatcgttcggaagttggTGAAGTCCTAAGAGCTAGCAACACCTTAGAAAAAGTGACATTTACGTTGTCGGCAGGGCGTGGCGAGGGCTGGGCTAGTGTccttgacgttggattaggtgctgactcatcattgtcgtctgttggtcttaggatttttggtgtattgaatcaatctgcattacaggctgtagagaatttgctgttcaacaaatgtctgtcctctctttctattactatgtatggagatgtacaggaatcgctcgctaaggcgcttgctggagggctggcaggaaatactgctgtcaagttccttgatttgtgcgtcaacggaaagttgagtttcgatggagcttgttcattagaagaaggtattttaagaaatggatctctgagaaatataaagatctctgttaatggagaacttgctgtcaattggcagggtgttggagagtga

Transcript

aech_s0437.g4.t1

gataaaagcacagatactaattacctcttatgctactttcagccgatagcgacatctctgttgtggtgacgttgctggaaagagagtacaaaagacgagctaagttcagaccgcttctgtggagcaaatgcacgaagctacaacttgaaaaagtctatacaaggctaagagttgtttccagacggaaagcaggaagttcggagataggggtagatgacatctttgggtcgagtgagaaagataatgatccattagtgcttgtagaggggagtccaggaattggcaaaagcaccttctgtctcaaacttgctcacgactgggcgaatggtgaaatgtctcgtaattttccaattttcaaacttgtatttttgctcaaatgcagggacatgaagggaggcatagtggaagacatttttgagcaacttctgcccgaagatctcaaggaaaaaaccaaagaactccttgtcaattttcttggggacttaaataagcagaaacaaattctcatcgttttggatggcttggatgagctcccagaaaagttggaagatcatgtgaacaaagtccttggcagaaaaaaattctctttatgctacgtgttggccacaacccgccaagagaaaggaattcataccagagaacaatttcaatttgacacttgccttgcgattgaaggatttagtgaagagaattcctttgagtacataaggaaacatttcagGAATATTGGTACAGAGCATTCATCCAAGGGAGAAAGGCTCATAGAAGAAATAAAACAGAACCCTTTATTAGGTGACCTCCAAAGCAACCCTTTAAATTTACTCCTCCTTTGCGTTGTTTACGAGGACCATGAAGGAAGTCTACCGTCCTCCATTACTGATCTTTACCAAACCATTGTGAGGTGCCTTTTGAGAAGATACTGTGCCAAAGAAAAATTAAAGGCTTCTGAAAAGGACGAGGACTTAGACAAACAATTTGAAATAGCCATCCTTGCGCTTGGGGAGCTCGCTTGGAAATGTCTGTTGAATAATCGTCTTAGTTTTTACGAAGACGAATTAAAAGAGTTGGAAAGAAGCAATGAGAACATTGTGGCTCGTAGACTCGGCCTTGTTTACAAGGAGGAAAGTTTGAAGCGATTGAAACCACGTCATGTGTACAGCTTTCTTCTTAAAACGTTTCAAGAGTATTTGGCTGCGTCATACATCGCCTTTAACTTACGAGCAAGCGTGTTTCATGTGCTCGACGAGCAAGTGAGACTTCATGATGTGACGAATAAATTTCGAAGAGTGTTTTTATTTGTGTGTGGACTACTGCGCGAAGAAgcaagtattctcttcacgcagattggtgatacgcttcagaaagactgggactggtccaaatgcagcaaaggtgcagcaagtttcttctctgaaagttggaaagaaagtggaaaggctgaaagaatggcgaatactctttgttcatttttaccctttcgtcgggttctacacgtaagcgaacaccaccacgaggagttgatcaatgttctagaggcgtgcgcagggttttccaaggtgcagacacccgctgaagttcacgttgcaattcctcctggtttacaagttgttaaaaacatccagcgtgttttggcgggggttccaaatgtgaaaacgcttatcttaccagctgtaagtgacagtattgatcgttcggaagttggTGAAGTCCTAAGAGCTAGCAACACCTTAGAAAAAGTGACATTTACGTTGTCGGCAGGGCGTGGCGAGGGCTGGGCTAGTGTccttgacgttggattaggtgctgactcatcattgtcgtctgttggtcttaggatttttggtgtattgaatcaatctgcattacaggctgtagagaatttgctgttcaacaaatgtctgtcctctctttctattactatgtatggagatgtacaggaatcgctcgctaaggcgcttgctggagggctggcaggaaatactgctgtcaagttccttgatttgtgcgtcaacggaaagttgagtttcgatggagcttgttcattagaagaaggtattttaagaaatggatctctgagaaatataaagatctctgttaatggagaacttgctgtcaattggcagggtgttggagagtgacagcgaagtcttctctagtgacgagccaagctctctctttgcgttctttgaggaagcagaaaaagtttcatccaaatctctttctctcacaatcaaccaaatgcccgaca

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF05729	NACHT	NACHT domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR007111	Domain	NACHT nucleoside triphosphatase	Interproscan
IPR032675	Homologous_superfamily	Leucine-rich repeat domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46844	SLR5058 PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
-	-	-	-

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K12800	NLRP3, PYPAF1; NACHT, LRR and PYD domains-containing protein 3	-	Pattern recognition receptors	ko04054	deepkoala