Gene detail

Detailed information of aech_s0661.g2.t1 in Acropora echinata

Genomic Location: sc0000661_pilon:8773...13025
NR annotation: XP_015759995.1, PREDICTED: E3 ubiquitin-protein ligase parkin-like [Acropora digitifera]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

Protein

Uniprot

Gene family

Uniprot term	Description
P36113	E3 ubiquitin-protein ligase HEL1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=HEL1 PE=1 SV=1
Q9Z1K6	E3 ubiquitin-protein ligase ARIH2 OS=Mus musculus OX=10090 GN=Arih2 PE=1 SV=1
Q9SKC3	Probable E3 ubiquitin-protein ligase ARI9 OS=Arabidopsis thaliana OX=3702 GN=ARI9 PE=2 SV=1

Gene family	Subfamily
Ubiquitin Family	E3\|E3 activity\|RBR

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01485	IBR	IBR domain, a half RING-finger domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR044066	Domain	TRIAD supradomain	Interproscan
IPR002867	Domain	IBR domain	Interproscan
IPR031127	Family	E3 ubiquitin ligase RBR family	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11685	RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0008270	Molecular Function	zinc ion binding	Interproscan
GO:0000151	Cellular Component	ubiquitin ligase complex	Interproscan
GO:0000209	Biological Process	protein polyubiquitination	Interproscan
GO:0004842	Molecular Function	ubiquitin-protein transferase activity	Interproscan
GO:0005737	Cellular Component	cytoplasm	Interproscan
GO:0005783	Cellular Component	endoplasmic reticulum	Interproscan
GO:0005794	Cellular Component	Golgi apparatus	Interproscan
GO:0005829	Cellular Component	cytosol	Interproscan
GO:0006511	Biological Process	ubiquitin-dependent protein catabolic process	Interproscan
GO:0016567	Biological Process	protein ubiquitination	Interproscan
GO:0031624	Molecular Function	ubiquitin conjugating enzyme binding	Interproscan
GO:0032436	Biological Process	positive regulation of proteasomal ubiquitin-dependent protein catabolic process	Interproscan
GO:0061630	Molecular Function	ubiquitin protein ligase activity	Interproscan