Gene detail

Detailed information of aech_s0796.g1.t2 in Acropora echinata

Genomic Location: sc0000796_pilon:1...18532
NR annotation: XP_029187907.2, DNA helicase MCM9-like [Acropora millepora]

Gene Structure

More details in Jbrowse

Sequence

CDS

aech_s0796.g1.t2

ATGCCTCGTTCTGTTCTGACCACTGGCATTGGTTCCACAAGTGCTGGGCTGACTGTGGCCGCCGTGAGAGATTCGGGCGAGTGGCAGTTGGAAGCAGGGGCTTTGGTCTTAGCAGATGGTGGACTGTGCTGTATTGATGAGTTCAATAGCATTCAGGAGCACGATAGAACATGTATTCACGAAGCTATGGAGCAGCAAACAATCAGCGTGGCTAAAGCCGGAATGGTTTGCAAATTGAATACAAGGACCACCATTCTGGCTGCCACCAATCCCAAGGGGCCGTACGACCCTTCAGAGTGCCTCAGTGTAAACATTGCAGTAGCCAGTCCGCTGTTGAGTCGTTTTGATTTGCTGCTTGTCTTACATGACGCCAAAAATGAAGAGTGGGATAGAATCGTCTCGTCGTTCATCCTGGAAGGAAGGGGTCCTCGAACAACTACCGGTTCCTCGTCCGATTCGTTGTGGAGTATGGACAAGATGCAGGCGTACTTCTGTTACATTAAAACGCTGAAACCCCAGCTAACTCCAGAGAGTAACAGAATTCTGAGCCGCTACTACCACTGTCAGCGGCAGGCGGATCTGCGAAATGCAGCACGCACCACTATTAGATTGCTGGAAAGTCTGATAAGATTAGCCCAGGCGCATGCGCGTTTGATGTTTCGCGAATTCGTTACTGTCCAAGACGCCATCGTAGCTGTGACATGCGTGGAATGTTCCATGCAAAACAGCGCCTTATTAGGAAATATGAACGCCTTGCATACGCGATTCCCGGATGATCCACACGAAGAATACTCGCGCCAGGCCACTCTTGTGCTGAAACGATTAAATCTGGAGGATATGATCACTGTTATTAACGTAGCAGCTGTGGTTGAAAATGGTCGTTGCGTTCACGACAGCGGAAACAATTTGCAAGACAGGACAAACTCATGTTCTTCAAACGAATCCCTTTCAGATGATAAGGCGGCGGACGAAGACAGAAGCAACTCTTCAGTCAACGTCGAGAACAATAGAGTCGTTTCACTGGACAAAAATGCATCGGTTTGTGATGAATCGGATGACTTCAATTCTCCGAGTCAATTAACAGGCGTTTGTCCGATTCAGTCTTCCTTTGGATTCGGCGCCGAAGATCATCTTCGCAACGATGCGAACTGTGTCGAATCTGATCCGAGAATTGATCTCGGAGATGAAACAACTATTGGCAGAGGAGAGACAGATAACAAAACTAACGGTGATTATTTTGGGCGACTAAAGAGAGCTGACAAATCTGAGGAGGATGAAGATGGCCCAGCTGAAGATGATGAATCTAATGATGAAGAAGTAGACAATGTGATTCAACGTTTTAGAGAAAAAGGAAAGAGAAAAACCAACAAAAAGCCTGGATGTAAGCCTAGGTGGTGTCCTAAAGATGATAAAGCGGCGGACGAAGACAGAAACAACTCTTCTATCAACGTCGAGAACAATAGAGTCGTTTCACTGGACAAAAATGCATCGGTTTGTGATGAATCGGATGACTTCAATTCTCCGAGTCAATTAACAGGCGTTTGTCCGATTCAGTCTTCGTTTGGATTTGGCACCGAAGATCATCTTCGCAACGATGCGAACTGTGTCGAATCTGATCCGAGAACTGATCTCGGAGATGAAACAACTATTGGCAGAGGAGAGACAGATAACAAAACTAACGGTGATTATTTTGGGCGAGTGTCCAGTTTTCAAGCAAGTTTAAGAACAATCGCAAGCAACAAAGCAAGTTCCTTGGAGAACGGAGTTGGTAGGGCGTTGGTGCCCTCGTCGCTTGAAAAAAGCAAAAAGATGATTGGCATGTTTTCAAAGAAACATCATGGCGCATCTGATAACAACAATGATCGTCAGAGGGCTCCAATAGATAACCTAAGCAAGCAGATTTTTGTGACCGAAGAATTCGACGATGAGGAACTGGAGGTAGAATGGCCTTCAAATTTCGTGTCAGCATCGAATGTCGATCATTCAATCTTGTCTTTGAGAGGAAGGGAAAGAACTGTTTAA

Transcript

aech_s0796.g1.t2

GAACAGGAAAATCGCAGTTTCTCAAGTACGCTGCCAAGATCATGCCTCGTTCTGTTCTGACCACTGGCATTGGTTCCACAAGTGCTGGGCTGACTGTGGCCGCCGTGAGAGATTCGGGCGAGTGGCAGTTGGAAGCAGGGGCTTTGGTCTTAGCAGATGGTGGACTGTGCTGTATTGATGAGTTCAATAGCATTCAGGAGCACGATAGAACATGTATTCACGAAGCTATGGAGCAGCAAACAATCAGCGTGGCTAAAGCCGGAATGGTTTGCAAATTGAATACAAGGACCACCATTCTGGCTGCCACCAATCCCAAGGGGCCGTACGACCCTTCAGAGTGCCTCAGTGTAAACATTGCAGTAGCCAGTCCGCTGTTGAGTCGTTTTGATTTGCTGCTTGTCTTACATGACGCCAAAAATGAAGAGTGGGATAGAATCGTCTCGTCGTTCATCCTGGAAGGAAGGGGTCCTCGAACAACTACCGGTTCCTCGTCCGATTCGTTGTGGAGTATGGACAAGATGCAGGCGTACTTCTGTTACATTAAAACGCTGAAACCCCAGCTAACTCCAGAGAGTAACAGAATTCTGAGCCGCTACTACCACTGTCAGCGGCAGGCGGATCTGCGAAATGCAGCACGCACCACTATTAGATTGCTGGAAAGTCTGATAAGATTAGCCCAGGCGCATGCGCGTTTGATGTTTCGCGAATTCGTTACTGTCCAAGACGCCATCGTAGCTGTGACATGCGTGGAATGTTCCATGCAAAACAGCGCCTTATTAGGAAATATGAACGCCTTGCATACGCGATTCCCGGATGATCCACACGAAGAATACTCGCGCCAGGCCACTCTTGTGCTGAAACGATTAAATCTGGAGGATATGATCACTGTTATTAACGTAGCAGCTGTGGTTGAAAATGGTCGTTGCGTTCACGACAGCGGAAACAATTTGCAAGACAGGACAAACTCATGTTCTTCAAACGAATCCCTTTCAGATGATAAGGCGGCGGACGAAGACAGAAGCAACTCTTCAGTCAACGTCGAGAACAATAGAGTCGTTTCACTGGACAAAAATGCATCGGTTTGTGATGAATCGGATGACTTCAATTCTCCGAGTCAATTAACAGGCGTTTGTCCGATTCAGTCTTCCTTTGGATTCGGCGCCGAAGATCATCTTCGCAACGATGCGAACTGTGTCGAATCTGATCCGAGAATTGATCTCGGAGATGAAACAACTATTGGCAGAGGAGAGACAGATAACAAAACTAACGGTGATTATTTTGGGCGACTAAAGAGAGCTGACAAATCTGAGGAGGATGAAGATGGCCCAGCTGAAGATGATGAATCTAATGATGAAGAAGTAGACAATGTGATTCAACGTTTTAGAGAAAAAGGAAAGAGAAAAACCAACAAAAAGCCTGGATGTAAGCCTAGGTGGTGTCCTAAAGATGATAAAGCGGCGGACGAAGACAGAAACAACTCTTCTATCAACGTCGAGAACAATAGAGTCGTTTCACTGGACAAAAATGCATCGGTTTGTGATGAATCGGATGACTTCAATTCTCCGAGTCAATTAACAGGCGTTTGTCCGATTCAGTCTTCGTTTGGATTTGGCACCGAAGATCATCTTCGCAACGATGCGAACTGTGTCGAATCTGATCCGAGAACTGATCTCGGAGATGAAACAACTATTGGCAGAGGAGAGACAGATAACAAAACTAACGGTGATTATTTTGGGCGAGTGTCCAGTTTTCAAGCAAGTTTAAGAACAATCGCAAGCAACAAAGCAAGTTCCTTGGAGAACGGAGTTGGTAGGGCGTTGGTGCCCTCGTCGCTTGAAAAAAGCAAAAAGATGATTGGCATGTTTTCAAAGAAACATCATGGCGCATCTGATAACAACAATGATCGTCAGAGGGCTCCAATAGATAACCTAAGCAAGCAGATTTTTGTGACCGAAGAATTCGACGATGAGGAACTGGAGGTAGAATGGCCTTCAAATTTCGTGTCAGCATCGAATGTCGATCATTCAATCTTGTCTTTGAGAGGAAGGGAAAGAACTGTTTAATTGAGATAATGGCGAGTTTTAGTGAAAATCAACGAAAACAAATTGGAATACAAATATAATGGCGTAACTCAAATTTAATGGCTTCTCAAACTTCCCTACCGGAATCACTTGTAGTAGAAAATTgagcgtgcatgaattgtcgcgtttcgcaaccAgccgcatttgaCCCGCCCCCCCCCCCCCC

Protein

Uniprot

Uniprot term	Description
F1QDI9	DNA helicase MCM9 OS=Danio rerio OX=7955 GN=mcm9 PE=3 SV=2
F6RIX4	DNA helicase MCM9 OS=Xenopus tropicalis OX=8364 GN=mcm9 PE=3 SV=1
Q9NXL9	DNA helicase MCM9 OS=Homo sapiens OX=9606 GN=MCM9 PE=1 SV=4

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF17855	MCM_lid	MCM AAA-lid domain	Domain	Interproscan
PF00493	MCM	MCM P-loop domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR041562	Domain	MCM, AAA-lid domain	Interproscan
IPR001208	Domain	MCM domain	Interproscan
IPR031327	Family	Mini-chromosome maintenance protein	Interproscan
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11630	DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003677	Molecular Function	DNA binding	Interproscan
GO:0005524	Molecular Function	ATP binding	Interproscan
GO:0032508	Biological Process	DNA duplex unwinding	Interproscan
GO:0000724	Biological Process	double-strand break repair via homologous recombination	Interproscan
GO:0003697	Molecular Function	single-stranded DNA binding	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0017116	Molecular Function	single-stranded DNA helicase activity	Interproscan
GO:0042555	Cellular Component	MCM complex	Interproscan