Gene detail

Detailed information of aflo_s0003.g167.t1 in Acropora florida

Genomic Location: sc0000003_pilon:1956396...1964796
NR annotation: XP_029191026.2, uncharacterized protein LOC114957691 [Acropora millepora]
Species Acropora florida · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

aflo_s0003.g167.t1

CAACAACAAAAAAACAGACAATAGTTCCCCTGTCCTCTCTTGTTAGGATGAGAGAAGCTGAGCCCACACACATATCTGCTGAGTCAGTCAAAATGGCTACCTCTGTGGATGTTGTAGAGGGAAGTGTTGAAGAGGAAATTGAGCTTTTGGAGGCCATTTATATCCACGAATTAACCGTTGAAGGACCGCGCGAAAGACCTACTTGTGTGAGTGTGTCACTTCATCCAAGCACAGCAGATGAGGAACACAAACGCTTTGTTTGTCTTACATTAGTGCTTGTCCTTCCTGAGAAGTACCCTCATGATTTGCCATCCATTCATGTCAAGACTCCCAGAGGATTGTCCGAAGCCCATGTTATCAGCATTTTGTCAAACCTTAAAGAACTTGCAGTCACCTGCCTTGGAAGACCTATGCTCTATGAGCTCATTGAGTACGCCAAAGAATGTCTTACAGACAACAATGTACCCAGTTGTGTTTGCGCTATTTGTCTCTGCCACTTTCAGGACACCCATGAATTCACTAAGACAGACTGCTATCATTACTTTCATTGTGACTGTTTGGCAAGGTACATTCAATTCTCACGTGAACAAGAGAAAACAGAAGAAGACAAAGATAAGGTTGAATGTCCTATGTGTAGACTTCCCATCAACTTCAACCTTACTGAACTACAGACAGTGGCCTCACACATGGTCACGGAAGATCAGTTCATTTATAGTCCCAGTGAAGAAATGCGGAAACTTCAGAAGAAAATGACCTCCTTATTTGAAAAGCAAAAGCTGAAAGGGGGAATCATTGACATTGAAGGAGAAAGAAATCGATATTTAATCGATATTACATCGGTTCGTCAAGGGGAGAGTTTGAAAAGCTCGCTACCCACAGGACCAGATATAGACACCTTAAAAATGAGCCTTATAACAGACCTTACAAGCAAGACTCCTAAAGGGTATGGCAAAAGTGACTATTTCTATGAATCAACTAAATCCAGTACGGAAGGCAAAGATGAAAGAGAGTTTTTCAAAAGCTTCCCTCCTGCTTTAGAGAAACCAAAAAACAAACCTGACGGTGAAAGGTTGAAGTATAGAGGAGTTTCTAGGTCGGAGAAGACGAAGGTATCAGGCGATGAGAGAACTCGGGGAACAGGAAACACTGCCAGGGTAAATCTTGATGTGAAAGAATCAGATTCGCTTGCAGAGGTGGTGGGTCCATGTGTGGACGGCAAACAGGAGAATGACCGAGCAAAGAGTAAATTGGAGAAGAAGAGTTTGTTCATGGATGAGACACCAAAGTGTATACCGAAGACAGTCTGGGTAAGTTTTGATGCAGACAAGTCAGATTTGCCCGAAAAGGAGGTTAGTCAGAACGGGAACGCCAAAAAGGGGAGTCACCTTGAAGAAATCGGACCAAGGCAAGGGATTGTTCGAAGGAAGGAACGTGGTGTTGCTAGCGACAGCAGCGTAGCACCAGGTTCACATTACGAGAGACCTAGATCTGCAAGAAGATGGCGTGGAAAAAGTGGAAGAGGAAGAACATCATGTGAAAGAAAAAGTGAATTTCGAGATAGTGGGAAGGATTCCAACAAAAATTCGCCACCATCTCAATCAGCTGTAAAACAAGTTAGAAAAGACAGATTAACAGAAGGGACGGAGCTCTCCCGACTTGACGATGGTGATAGTAGCTCCAGGAATGCTACTTCATCAGTTGACAGCGTGAAAACTTCGAATAATCAGCCCCCAAAGGGTGCGATGCCCTCCCATCAGGACTATAATTGTTATTTTGGTCAAGGAAGGTCACTTAATAAGGAATTTCCAAGTACCAAGGGCAGGAGAAGTCCGCGGACCAATAAAAGCAAAGCTTGTATGCCTCCTCCGGGTTTTGAGAGAGTGGTGGCCAGTGCTGGGGGATGTGATCATTCTACAAACTATATCCCAGCACCTGCCTCAGGGGTTAACAAGGGTGTATCACAACACAGGCCTCCACCTGGACTAAGTACGACCGTGAAAGGGAAAGAACCTTGCAGGAACCCTGTGGTCCCAAGTCTAAGTCAAATATATACTTAGGCAAAATATAAATCTTGATGGAAT

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9QZR0	E3 ubiquitin-protein ligase RNF25 OS=Mus musculus OX=10090 GN=Rnf25 PE=1 SV=2
Q96BH1	E3 ubiquitin-protein ligase RNF25 OS=Homo sapiens OX=9606 GN=RNF25 PE=1 SV=1
Q5E9N3	E3 ubiquitin-protein ligase RNF25 OS=Bos taurus OX=9913 GN=RNF25 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005039 (this species only)
Ubiquitin family	E3\|E3 activity RING\|RING · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF05773 all species →	RWD	RWD domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001841 all species →	Domain	Zinc finger, RING-type	Interproscan
IPR016135 all species →	Homologous_superfamily	Ubiquitin-conjugating enzyme/RWD-like	Interproscan
IPR006575 all species →	Domain	RWD domain	Interproscan
IPR039133 all species →	Family	E3 ubiquitin-protein ligase RNF25	Interproscan
IPR013083 all species →	Homologous_superfamily	Zinc finger, RING/FYVE/PHD-type	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13198 all species →	RING FINGER PROTEIN 25	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0016567 all species →	Biological Process	protein ubiquitination	Interproscan
GO:0061630 all species →	Molecular Function	ubiquitin protein ligase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K10640	RNF25, AO7; E3 ubiquitin-protein ligase RNF25	EC:2.3.2.27	Ubiquitin system	ko04121	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.