Gene detail

Detailed information of aflo_s0009.g8.t1 in Acropora florida

Genomic Location: sc0000009_pilon:122956...179537
NR annotation: XP_029213752.1, probable ATP-dependent RNA helicase DDX41 isoform X1 [Acropora millepora]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

aflo_s0009.g8.t1

CTACCAGCTGTCCGCTGCATAACTATTAAAAGATGGATAGGAAAAGGGCTCATAAGGAAGATATTTCTGATGATGAAGACTTTGTTCCTTATGTTCCTTTAAAAGAAAGAAGGAGACTTGAGCTTGAAAAACGAGAGAAGTATTTAAAGCAGAAAGCAGATCCACAACCACACACAGATACTGTACACACTTCAAGGGAACCAGTTTTGGAAAAGATAGAGAAAAGTGAGGAGAGCTCTTTTGGGATGAAATCCAATGTTAGTTTGCTAGATCAACACACAGAACTAAAGAAGATTGCTGAAGCTGAGAAAGAGACAGATCATGAAAAACAACTAAAGGAGGAAGAAAAGATCCTGGACAGTATAGCTGAAAAAAAAGTGCTTATGGCTGTTGGTGAAATTGCGAAAGGAATTGTGTACACTGATTCTATCAAGACTGGGTGGCGTCCTCCAAGATACTTTCAGTGTTACTCACCAGAGAAGTTTCAAAAGTTGAGGAAGAAATGGCACATTCTAGTTGAGGGAGAGGATATACCACCTCCTATAAGGACTTTTAAGGAAATGAAGTTTCCAAGAGCTGTATTAAACACTTTGAAGAGTAAAGGAATAACTCACCCAACACCCATACAAGTTCAAGGAATACCAACAGTCCTCAGTGGAAGAGACATGATTGGTATTGCATTCACAGGTTCTGGGAAAACTTTAGTGTTTACTCTTCCTATTATCATGTTTAGTATGGAACAGGAAAAGGCTCTACCTTTTCAGAGACAAGAAGGACCCTATGGACTAATTGTTGTTCCATCCGTAAGTCTGCTTGTTTGTTTTTGCTTTTTCCTGTTTGCTTTTCGCTGCCAGGGAATTGGCTCGACAAACATTTGAAGTGATATCGGAATTTACGAAGGCTCTTCAATTGGATGGCTTCCCACCTCTACGTTCAGCTCTGTGCATTGGTGGGACTTCAGTCAAGGACCAGATGGAGACAATCAAAAGAGGTGTACATATGATGGTAGCTACTACAGGGCGTTTGATGGATTTATTGGATAAGAAAATGGTTAATCTTGACATCTGCAGATACCTTGTTCTGGATGAGGCTGATCGTATGATTGATATGGGATTTGAAGAAGATGTTAGGACAATTTTTTCCTACTTCAAGTCCCAGCGACAGACGCTCCTGTTTAGCGCTACAATGCCGAAAAAGATACAGAACTTTGCCAAGAGTGCTCTTGTGAAGCCAGTAACAGTAAACGTGGGAAGAGCGGGCGCCGCAAGTCTTGATGTCATTCAGGAGGCTGAATATGTAAAACAAGAAGCCAAAGTTGTGTACCTGCTTGAGTGCTTGCAGAAAACGCCCCCTCCGGTTCTCATTTTTGCGGAGAAAAAGGCAGATGTGGATGATATTCATGAGTATTTGCTACTGAAGGGAGTTGAAGCCGTGGCTATTCACGGAGACAAAGATCAGGAAGAAAGAGAGTATGCCATGAGATGCTTTAGGGAGGGAAAGAAAGATGTCATGGTAGCTACTGATGTGGCATCCAAAGGACTCGATTTTCCTGATATTCAGCATGTTATTAATTTTGACATGCCTGAGGACATTGAAAATTATGTTCACAGGATTGGTCGCACTGGTCGCTGTGGGAAGACTGGAATTGCTACAACATTCATTAACAAATCTTGTGATGAATCCGTTTTGTTGGATCTAAAGCATTTGTTGCTGGAAGCTAAACAGAAAATACCCCCTGTCCTCGCCGTGTTACAAGTGGAAAATGAAGGCTACCTTGACCTTGGAGAGGAACGCGGTTGTACTTACTGCGGTGGTCTTGGCCATAGAATCACTGAATGTCCCAAGCTTGAAGCAATGCAAAACAAGCAAGCTGGCAATATCGGTCGTAGGGATTACTTGGCACCAGGAGCAGCTGACTGGTAAAATAATGGTCATAGCAATCCCCACCCTTCTCCTCCACTATTTCTTTATTTAAGAAGGACGACGCACAATAATGAATTGTTCTGCATTTATTAGAAGTTTCATTAATTTCAGAAAAAAAAAAAACACCTAATGGAAATTGTTTGAGCTAACATTGCAGTGGAATCGAAGAACCAACTCGAAACTTGTCGAAACACTTGGTTGCAACTTGATTGTAATTCACGCGCGCAATAAAGCCACTTTAATCTA

Protein

Uniprot

Uniprot term	Description
Q9UJV9	Probable ATP-dependent RNA helicase DDX41 OS=Homo sapiens OX=9606 GN=DDX41 PE=1 SV=2
Q91VN6	Probable ATP-dependent RNA helicase DDX41 OS=Mus musculus OX=10090 GN=Ddx41 PE=1 SV=2
Q9V3C0	ATP-dependent RNA helicase abstrakt OS=Drosophila melanogaster OX=7227 GN=abs PE=1 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00270	DEAD	DEAD/DEAH box helicase	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR011545	Domain	DEAD/DEAH box helicase domain	Interproscan
IPR014014	Domain	RNA helicase, DEAD-box type, Q motif	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR47958	ATP-DEPENDENT RNA HELICASE DBP3	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000398	Biological Process	mRNA splicing, via spliceosome	Interproscan
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0003724	Molecular Function	RNA helicase activity	Interproscan
GO:0005681	Cellular Component	spliceosomal complex	Interproscan
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0005524	Molecular Function	ATP binding	Interproscan