Detailed information of aflo_s0011.g104.t1 in Acropora florida

Genomic Location: sc0000011_pilon:1683034...1688352
NR annotation: XP_015762442.1, PREDICTED: SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1-like isoform X2 [Acropora digitifera]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot
Uniprot termDescription
Q6GQ82SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1 OS=Xenopus laevis OX=8355 GN=smarcb1 PE=2 SV=1
Q6DFM1SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1 OS=Xenopus tropicalis OX=8364 GN=smarcb1 PE=2 SV=1
Q5BIN2SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1 OS=Bos taurus OX=9913 GN=SMARCB1 PE=2 SV=1

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF21459INI1_DNA-bdSWI/SNF Subunit INI1, DNA binding domainDomainInterproscan
PF04855SNF5SNF5 / SMARCB1 / INI1FamilyInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR017393FamilyChromatin-remodeling complex component Sfh1/SNF5Interproscan
IPR048664DomainSWI/SNF Subunit INI1, DNA binding domainInterproscan
IPR006939FamilySNF5/SMARCB1/INI1Interproscan

 PANTHER
PANTHER termDescriptionSource
PTHR10019SNF5Interproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0006338Biological Processchromatin remodelingInterproscan
GO:0003712Molecular Functiontranscription coregulator activityInterproscan
GO:0003713Molecular Functiontranscription coactivator activityInterproscan
GO:0005634Cellular ComponentnucleusInterproscan
GO:0035060Cellular Componentbrahma complexInterproscan
GO:0071564Cellular ComponentnpBAF complexInterproscan
GO:0071565Cellular ComponentnBAF complexInterproscan
GO:1900461Biological Processpositive regulation of pseudohyphal growth by positive regulation of transcription from RNA polymerase II promoterInterproscan
GO:0000228Cellular Componentnuclear chromosomeInterproscan

 KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K11648SMARCB1, SNF5, INI1; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1-Chromosome and associated proteinsko03036deepkoala

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