Gene detail

Detailed information of aflo_s0019.g10.t1 in Acropora florida

Genomic Location: sc0000019_pilon:190126...192725
NR annotation: XP_044168886.1, nucleotide-binding oligomerization domain-containing protein 2-like [Acropora millepora]

Gene Structure

More details in Jbrowse

Sequence

CDS

aflo_s0019.g10.t1

atggaagaaaagatgcccgtttccgttttgtataagaaactggcggcgggagaacttcttcgtggtgcgagcatactcgcgacaacaagaccaactgctgtcaaatatgtcgcacattccgatgttgaaagaacagtcgaaatccgcggatttacgtccgagaatgttgaagaatatgttgagaaatttactcgacgttaccccggagcaaaggagaaaatatggggacacatcaagtccaacattaacctcttttcattgagctacatcccagtgaactgctttctcatttgccactgcttacttcaaagtatcctatgtgagttttcccaactgccaacgaggatgacggacatttatcaaatgaccgtaaagatgttcttgttcaatcacatgcacaacagggaaggactccctcgagaggaactcgaaaagcttaagtcaacgcacatgtatgagccatttgaaaacttccctcgagagcttcaaaaaatcttgaacagtcttggagaaatcgcttttaaagggattcaagaaggaagactgctctttgaatcaagcgaagtcagtgggttggaagattgcggactgcttcacaaattgccagaccaaaaaccgaaagcatggaatgacccgcgaaagtcccaattctgttttattcacctgactgtgcaagaattctttgccgctaagcatctggtcaacaccaagacaaaaaggaaaattaaaagatttgtttgcagtcatatcaaacatggcacatggcaagttgtactacagttcgtagccggattgctaaatagctcaagggacatttttatcaaactgttgccgaagccgagtaagggaagatggccagcgacagaagaagacaaagctctagctgtgcaagtatgtaagtgtctgtacgagattaacgatgaacagcagccagtattacaaaacaaactggagaaaatgaaatttaacacagttgactttgatctttgttcactcgcaccgattgatgttgctgctgttttatatttcctaagaaatgccgaagttttgaactttcatttgcccttcaatcagttaggagacttgggcgcaaacgaagtgaaaaattttattgttaacagggaacgaaaactaaaagagttgaacctcagtagtaataacctgaccgacaacgcagcgaaggatttcgctgcagctcttgagcacagtaattgtaaactagaaacgttagacctcagggagaacaacttcactgacaacgcagcgaaggatttcgctgctgcacttgagcacagtaattgtaaactagaaacgttagacctcagggagaacaacttcactgacaacgcagcgaaggatttcgctgctgcacttgagcacagtaattgtaaactagaaacgttattcctcagttacaacaacttcaccgacaacgcagcgaaggatttcgctgcagcacttgagcacagtaattgtaaactagaaacgttagacctcagggagaacaacttcaccgacaacgcagcgaaggatttcgctgcagcacttgagcacagtaattgtaaactagaaacgttagacctcagtgagaacaacttcaccgacaacgcagcgaaggatttcgctgcagcacttgagcacagtaattgtaaactagaaacgttagacctcagtgagaacaacttcactgacaacgcagcgaaggatttcgctgcagcacttaagcacagtaattgtaaactaaaaacgttagggttcagtcacaacaaattcactgacagcgcagcgaaagatttcgctgcagcacttaagcacagtaattgtaaactagaatcgttaaacctcagggacaacaacttcgctgacaatgcagcgaaggatttcgctgcagcacttacgcacagtaattgtaaactagaaacgttaaacctcagtcacaacaacttcactgacaacgcagcgaaggatttcgctgcagcacttaagcacagtaattgtaaactaaaagcgttagacctcagtagtaataacctcaccgacaacgcagcgaaggattttgctgcagcacttgagcacagtaattgtaaactaggaacgttatacctcgataacaacaacttcactgacaacgcagcgaaggatttcgctgcagcacttaagcacagtaattgtaaactagaaacgttagacctcagggagaacaacttcaccgacaacgcagcgaaggatttcgctgcagcacttgagtacagtaattgtaaactgaaaatattattcctcagtgaagaaaacttcacaaacgaaggataccggtatttaagcgacgcacaaaagcaaagcaattgccgagttactttgcgttaa

Transcript

aflo_s0019.g10.t1

gtccaaagccattctaccaaagttcttttaatctttgatggactggatgaatattcaagaaaagaggaaatcaacacccacgaagagtacgagaacgacatggaagaaaagatgcccgtttccgttttgtataagaaactggcggcgggagaacttcttcgtggtgcgagcatactcgcgacaacaagaccaactgctgtcaaatatgtcgcacattccgatgttgaaagaacagtcgaaatccgcggatttacgtccgagaatgttgaagaatatgttgagaaatttactcgacgttaccccggagcaaaggagaaaatatggggacacatcaagtccaacattaacctcttttcattgagctacatcccagtgaactgctttctcatttgccactgcttacttcaaagtatcctatgtgagttttcccaactgccaacgaggatgacggacatttatcaaatgaccgtaaagatgttcttgttcaatcacatgcacaacagggaaggactccctcgagaggaactcgaaaagcttaagtcaacgcacatgtatgagccatttgaaaacttccctcgagagcttcaaaaaatcttgaacagtcttggagaaatcgcttttaaagggattcaagaaggaagactgctctttgaatcaagcgaagtcagtgggttggaagattgcggactgcttcacaaattgccagaccaaaaaccgaaagcatggaatgacccgcgaaagtcccaattctgttttattcacctgactgtgcaagaattctttgccgctaagcatctggtcaacaccaagacaaaaaggaaaattaaaagatttgtttgcagtcatatcaaacatggcacatggcaagttgtactacagttcgtagccggattgctaaatagctcaagggacatttttatcaaactgttgccgaagccgagtaagggaagatggccagcgacagaagaagacaaagctctagctgtgcaagtatgtaagtgtctgtacgagattaacgatgaacagcagccagtattacaaaacaaactggagaaaatgaaatttaacacagttgactttgatctttgttcactcgcaccgattgatgttgctgctgttttatatttcctaagaaatgccgaagttttgaactttcatttgcccttcaatcagttaggagacttgggcgcaaacgaagtgaaaaattttattgttaacagggaacgaaaactaaaagagttgaacctcagtagtaataacctgaccgacaacgcagcgaaggatttcgctgcagctcttgagcacagtaattgtaaactagaaacgttagacctcagggagaacaacttcactgacaacgcagcgaaggatttcgctgctgcacttgagcacagtaattgtaaactagaaacgttagacctcagggagaacaacttcactgacaacgcagcgaaggatttcgctgctgcacttgagcacagtaattgtaaactagaaacgttattcctcagttacaacaacttcaccgacaacgcagcgaaggatttcgctgcagcacttgagcacagtaattgtaaactagaaacgttagacctcagggagaacaacttcaccgacaacgcagcgaaggatttcgctgcagcacttgagcacagtaattgtaaactagaaacgttagacctcagtgagaacaacttcaccgacaacgcagcgaaggatttcgctgcagcacttgagcacagtaattgtaaactagaaacgttagacctcagtgagaacaacttcactgacaacgcagcgaaggatttcgctgcagcacttaagcacagtaattgtaaactaaaaacgttagggttcagtcacaacaaattcactgacagcgcagcgaaagatttcgctgcagcacttaagcacagtaattgtaaactagaatcgttaaacctcagggacaacaacttcgctgacaatgcagcgaaggatttcgctgcagcacttacgcacagtaattgtaaactagaaacgttaaacctcagtcacaacaacttcactgacaacgcagcgaaggatttcgctgcagcacttaagcacagtaattgtaaactaaaagcgttagacctcagtagtaataacctcaccgacaacgcagcgaaggattttgctgcagcacttgagcacagtaattgtaaactaggaacgttatacctcgataacaacaacttcactgacaacgcagcgaaggatttcgctgcagcacttaagcacagtaattgtaaactagaaacgttagacctcagggagaacaacttcaccgacaacgcagcgaaggatttcgctgcagcacttgagtacagtaattgtaaactgaaaatattattcctcagtgaagaaaacttcacaaacgaaggataccggtatttaagcgacgcacaaaagcaaagcaattgccgagttactttgcgttaaaaagacaaaaaccctcacatgcttaaccctgtcattgaaagctcgtataatttgaaatcaaatgcttatagcgaataagacaaaaggtgaaattgaaaagggaccatggatatacataacaaaagtgactcaaacat

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13516	LRR_6	Leucine Rich repeat	Repeat	Interproscan
PF05729	NACHT	NACHT domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR051261	Family	NOD-like receptor (NLR)	Interproscan
IPR001611	Repeat	Leucine-rich repeat	Interproscan
IPR032675	Homologous_superfamily	Leucine-rich repeat domain superfamily	Interproscan
IPR007111	Domain	NACHT nucleoside triphosphatase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24106	NACHT, LRR AND CARD DOMAINS-CONTAINING	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0035556	Biological Process	intracellular signal transduction	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan