Genomic Location: sc0000025_pilon:1061514...1064243
NR annotation: RMX60746.1, hypothetical protein pdam_00014294 [Pocillopora damicornis]
Species Acropora florida · all data for this species · gene families
| CDS |
| aflo_s0025.g74.t1 |
| Transcript |
| aflo_s0025.g74.t1 |
| Protein |
| aflo_s0025.g74.t1 |
| UniProt accession | Description |
|---|---|
| Q9VC49 | DNA-directed RNA polymerases I, II, and III subunit RPABC5 OS=Drosophila melanogaster OX=7227 GN=Polr2L PE=1 SV=1 |
| Q32P78 | DNA-directed RNA polymerases I, II, and III subunit RPABC5 OS=Bos taurus OX=9913 GN=POLR2L PE=1 SV=1 |
| Q6QN04 | DNA-directed RNA polymerases I, II, and III subunit RPABC5 OS=Chinchilla lanigera OX=34839 GN=POLR2L PE=3 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0011929 (this species only) · gene tree & orthology |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF01194 all species → | RNA_pol_N | RNA polymerases N / 8 kDa subunit | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR000268 all species → | Family | DNA-directed RNA polymerase subunit RPABC5/Rpb10 | Interproscan |
| IPR023580 all species → | Homologous_superfamily | RNA polymerase subunit RPB10 | Interproscan |
| IPR020789 all species → | Binding_site | RNA polymerases, subunit N, zinc binding site | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR23431 all species → | DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC5 FAMILY MEMBER | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0003677 all species → | Molecular Function | DNA binding | Interproscan |
| GO:0003899 all species → | Molecular Function | DNA-directed 5'-3' RNA polymerase activity | Interproscan |
| GO:0006351 all species → | Biological Process | DNA-templated transcription | Interproscan |
| GO:0001054 all species → | Molecular Function | RNA polymerase I activity | Interproscan |
| GO:0001055 all species → | Molecular Function | RNA polymerase II activity | Interproscan |
| GO:0001056 all species → | Molecular Function | RNA polymerase III activity | Interproscan |
| GO:0005665 all species → | Cellular Component | RNA polymerase II, core complex | Interproscan |
| GO:0005666 all species → | Cellular Component | RNA polymerase III complex | Interproscan |
| GO:0005736 all species → | Cellular Component | RNA polymerase I complex | Interproscan |
| GO:0006360 all species → | Biological Process | transcription by RNA polymerase I | Interproscan |
| GO:0006366 all species → | Biological Process | transcription by RNA polymerase II | Interproscan |
| GO:0008270 all species → | Molecular Function | zinc ion binding | Interproscan |
| GO:0042797 all species → | Biological Process | tRNA transcription by RNA polymerase III | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K03007 | RPABC5, RPB10, POLR2L; DNA-directed RNA polymerases I, II, and III subunit RPABC5 | - | DNA repair and recombination proteins | ko03400 | deepkoala |
Genes whose expression across the transcriptome samples of Acropora florida tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.
No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.
Whether this gene can be visualised in the single-cell atlases of Acropora florida, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.
No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.
Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.
No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.
Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.
| Analysis | What it does | Status | |
|---|---|---|---|
| Primer design | Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed. | template found | open → |
| BLAST | Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start. | template found | open → |
| Expression heatmap | Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it. | no expression matrix | – |
| Gene family / orthogroup | Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue. | open → | |
| Gene set analysis | Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it. | open → |
