Gene detail

Detailed information of aflo_s0026.g119.t1 in Acropora florida

Genomic Location: sc0000026_pilon:2007679...2013047
NR annotation: XP_044173071.1, uncharacterized protein LOC122957177 [Acropora millepora]

Gene Structure

More details in Jbrowse

Sequence

CDS

aflo_s0026.g119.t1

atgtctgtttgtgttcctgaagttccttctcatggtcctggagtttggaagctcaacttatctgttttaaatgaccctgagtatatctctcttattaccaatttctggtctcattggcgtgctgcgcagccccgttttcccactctggctaagtggtgggacaaggggaaaagtatcattaagggactcactattagatattgctgtgttcgttcttctcagcggtcacaacaccgtggcctcttgtctaggctggcagaccacctaaaatgccgtgtcgatgctggttttatatcttatttggggccctaccgctccactcttgcggagattgcccgaatggacattgaggttgcccgtggggctcaggttcgtgctcgcgctcgttgggtggaagagggtgaaacatcttcagctttctttcttcgtctcgagaaaaagcgagctgctgaccggtctgttgcagccttgcgtacaaacgaccgatccattgtatcccataatgatgacctgtgtcgtgttttttcgtccttttatgagtccttgtttactgctgaagctaccgatcctgctatagccaactccttgttgagcaatgtctcctccactctgccttcaactcaggccgacctttgcgatgggcctttgagttttgatgaatgttttgcagcattaaatggtgtccctttagccattttgtccctggatcaagagaaagcttttgatcatgtggactggggcttcatgcgtgcaaccatcagtaggatgggatttaagtattcctttctacggtgggttagtcttttctatacccaagttcagagtgccgttattgttaatggacatatctcccctttcttttctctgtctagaggtgtgaggcagggatgtcccctctctccacttttgtatgtacttgttgcagaaacacttgctgtgaatattcggtgtaatcctcgcatccccggcttgtgccttcctggcgtacccttggtggtatctccggtacatcagtatgcggatgatactacactcattttatcaactgatgactcaatcaaggctgtcttcgatatttattccttgttcgagaaagcttcgggctctcgacttaatcagtccaagtctaaaggtctgtggctgggtagctgggttggccgtgtggatctccctgtggctctggactggtctccatctaaacttaagattcttgggatttatgtgggcttgggcaacctcgaggaggacaactggggtcctcgaatttgtgctgttgaaaaaactctgctttcttggcgtcagcgtaatctttcgttccggggcaaggctctggtcattaacgcccttgccttgtcacggatttgctatcagcactgcactgatgaggcccagaaggccgaaacagtgagtgctagtgacgttctcgttgtttcttttcagaaagagatgcctacgcaagatgaatatcccaagagtgtggtgctgcactttccaccaagtgtataccagaagatcggtgctgctgagatgatcccaaaactgttggagatttttaacgttgaagaccttcgctgtttacagttcctgcgcgatggaaaggttcgtgtgtcctttcgtgagaaagaggtccgtgaccactacttggttgaaggcatgcgctttggggaccatgacatcccagtgaccaaagatggccagaaagtgtcggtgttatacatcagagacctgccctacgaagtttcaagtgacgagcttgtcgagttcttctcgaattacggagaggttcttaccgtggaacgttccgtggctgaaaattttcctaatctatgtaatggcaatcgtgtcctcaaaatgatcctgaatgaagaacttccgtatttcctgtctgtgtgtggctgccagtgtcgtgtatggtatcgtggacaacctattcaatgttttgtgtgccgtgaacttggtcaccgggcccaggcctgcccactgtctggccggtgccgtcactgtcaccaggttggccatatggccagagagtgcgtgcgggcctgggacccgcacccttctgtttcTGCCGTTCCTGCTGATGTTGATCCTCCCGTTAAACCTGTTGCTGACTCTGTTGATAATTCATCTGATGCTGTTATGTCTAGTGAAGATGTTGACAAATCAGTGGATAAACCGCCTGTTGATAAATTAGTGGATAAGCTGCCTGTTGCTCCGATCAATGATGTTGATAAACCGTCTGCTGTTCCTCTCTGTTCTACAATGCCTGTTGATAAATCAGCGGATAAACTGCCTGTTAATAATTCATCTGTTGTTATGACCAATGATGTTGCTGATAAGCCAGTGGATAAACCGCCTGCTCTTCTTTCTTGGCCTCGTTCTACAATACCTGGAACCACCATTGTCAGAGATTTTCTCCCGTTGGCTGCAGCCGGTCCTAAGTATCATTCTTTATATGGATCAGTTCGTGGTTTTATTCAGAAAATGACGCCTGCTCAGTTTATGAAGATGTCCGCTTTGGAATTAAAGACAAGAATTACTGACTTTTTGTGGACAAAAAATATTTCTCCTGACAGTGCTGTTTTAGAGGGTTTGCTATTGCGCCTTAGTAAACTCAAGAAGGCGTTGGAGAAATTGTGA

Transcript

aflo_s0026.g119.t1

gtgggtcccgtctgtgtcctcttgtgatattgttgcttgccctttctcggatcattgcgctgttatgtctgtttgtgttcctgaagttccttctcatggtcctggagtttggaagctcaacttatctgttttaaatgaccctgagtatatctctcttattaccaatttctggtctcattggcgtgctgcgcagccccgttttcccactctggctaagtggtgggacaaggggaaaagtatcattaagggactcactattagatattgctgtgttcgttcttctcagcggtcacaacaccgtggcctcttgtctaggctggcagaccacctaaaatgccgtgtcgatgctggttttatatcttatttggggccctaccgctccactcttgcggagattgcccgaatggacattgaggttgcccgtggggctcaggttcgtgctcgcgctcgttgggtggaagagggtgaaacatcttcagctttctttcttcgtctcgagaaaaagcgagctgctgaccggtctgttgcagccttgcgtacaaacgaccgatccattgtatcccataatgatgacctgtgtcgtgttttttcgtccttttatgagtccttgtttactgctgaagctaccgatcctgctatagccaactccttgttgagcaatgtctcctccactctgccttcaactcaggccgacctttgcgatgggcctttgagttttgatgaatgttttgcagcattaaatggtgtccctttagccattttgtccctggatcaagagaaagcttttgatcatgtggactggggcttcatgcgtgcaaccatcagtaggatgggatttaagtattcctttctacggtgggttagtcttttctatacccaagttcagagtgccgttattgttaatggacatatctcccctttcttttctctgtctagaggtgtgaggcagggatgtcccctctctccacttttgtatgtacttgttgcagaaacacttgctgtgaatattcggtgtaatcctcgcatccccggcttgtgccttcctggcgtacccttggtggtatctccggtacatcagtatgcggatgatactacactcattttatcaactgatgactcaatcaaggctgtcttcgatatttattccttgttcgagaaagcttcgggctctcgacttaatcagtccaagtctaaaggtctgtggctgggtagctgggttggccgtgtggatctccctgtggctctggactggtctccatctaaacttaagattcttgggatttatgtgggcttgggcaacctcgaggaggacaactggggtcctcgaatttgtgctgttgaaaaaactctgctttcttggcgtcagcgtaatctttcgttccggggcaaggctctggtcattaacgcccttgccttgtcacggatttgctatcagcactgcactgatgaggcccagaaggccgaaacagtgagtgctagtgacgttctcgttgtttcttttcagaaagagatgcctacgcaagatgaatatcccaagagtgtggtgctgcactttccaccaagtgtataccagaagatcggtgctgctgagatgatcccaaaactgttggagatttttaacgttgaagaccttcgctgtttacagttcctgcgcgatggaaaggttcgtgtgtcctttcgtgagaaagaggtccgtgaccactacttggttgaaggcatgcgctttggggaccatgacatcccagtgaccaaagatggccagaaagtgtcggtgttatacatcagagacctgccctacgaagtttcaagtgacgagcttgtcgagttcttctcgaattacggagaggttcttaccgtggaacgttccgtggctgaaaattttcctaatctatgtaatggcaatcgtgtcctcaaaatgatcctgaatgaagaacttccgtatttcctgtctgtgtgtggctgccagtgtcgtgtatggtatcgtggacaacctattcaatgttttgtgtgccgtgaacttggtcaccgggcccaggcctgcccactgtctggccggtgccgtcactgtcaccaggttggccatatggccagagagtgcgtgcgggcctgggacccgcacccttctgtttcTGCCGTTCCTGCTGATGTTGATCCTCCCGTTAAACCTGTTGCTGACTCTGTTGATAATTCATCTGATGCTGTTATGTCTAGTGAAGATGTTGACAAATCAGTGGATAAACCGCCTGTTGATAAATTAGTGGATAAGCTGCCTGTTGCTCCGATCAATGATGTTGATAAACCGTCTGCTGTTCCTCTCTGTTCTACAATGCCTGTTGATAAATCAGCGGATAAACTGCCTGTTAATAATTCATCTGTTGTTATGACCAATGATGTTGCTGATAAGCCAGTGGATAAACCGCCTGCTCTTCTTTCTTGGCCTCGTTCTACAATACCTGGAACCACCATTGTCAGAGATTTTCTCCCGTTGGCTGCAGCCGGTCCTAAGTATCATTCTTTATATGGATCAGTTCGTGGTTTTATTCAGAAAATGACGCCTGCTCAGTTTATGAAGATGTCCGCTTTGGAATTAAAGACAAGAATTACTGACTTTTTGTGGACAAAAAATATTTCTCCTGACAGTGCTGTTTTAGAGGGTTTGCTATTGCGCCTTAGTAAACTCAAGAAGGCGTTGGAGAAATTGTGATTTTTCGTGAACTGTCCGATCCTGGTGATGTGATGATTAACCTTGTCTGCTATTATGTTCACATTCCAGGCCTGATGTTCCTGGAATGGCATCCTTTTAGGATGAGACCTGCAGACAAGTCGGACTTATTTTTGAATTTCTTTTGTTTTCGATATCGTTGATATACTTTTGA

Protein

Uniprot

Uniprot term	Description
P08548	LINE-1 reverse transcriptase homolog OS=Nycticebus coucang OX=9470 PE=4 SV=1
P0CV25	Secreted RxLR effector protein 78 OS=Plasmopara viticola OX=143451 GN=RXLR78 PE=3 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00078	RVT_1	Reverse transcriptase (RNA-dependent DNA polymerase)	Domain	Interproscan
PF00076	RRM_1	RNA recognition motif	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001878	Domain	Zinc finger, CCHC-type	Interproscan
IPR000477	Domain	Reverse transcriptase domain	Interproscan
IPR052343	Family	Diverse Retrotransposon and Effector-Associated Protein	Interproscan
IPR000504	Domain	RNA recognition motif domain	Interproscan
IPR036875	Homologous_superfamily	Zinc finger, CCHC-type superfamily	Interproscan
IPR035979	Homologous_superfamily	RNA-binding domain superfamily	Interproscan
IPR043502	Homologous_superfamily	DNA/RNA polymerase superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46890	NON-LTR RETROLELEMENT REVERSE TRANSCRIPTASE-LIKE PROTEIN-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0008270	Molecular Function	zinc ion binding	Interproscan
GO:0003723	Molecular Function	RNA binding	Interproscan