Gene detail

Detailed information of aflo_s0026.g82.t1 in Acropora florida

Genomic Location: sc0000026_pilon:1355682...1358131
NR annotation: XP_029193351.2, ATP-sensitive inward rectifier potassium channel 12-like [Acropora millepora]
Species Acropora florida · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

aflo_s0026.g82.t1

GCATTGTTGTTCATTATTTCCCAGGACAACAATCATAAATTCAAAGGAACGCTTCCAATATATTAAGCTAACAAAACAAAAAACACGAATATTTTTGGAAACGACGGAAAGGTGAAGAATAGTATCGCACTCAGAGGGGCTGCTGTTCCGCATTGACCACAGTTTCGATAACCTTACGTCTAGAAAGAAGCGACTCGCTTAAAAACGGAGACAGACGGAATTGTTGAAGAAACGAGACCAACAGCCTGACTCTGTAAAGTTCTCTCAGTGGATAAGTCATGGGTCTCTTTGGTGACCTCGAGGATAATGTAGAGCTTAAAGAGATCAAGATTCGGCACTCAGACGGGACAAATAACTATAGAGACAACGAAACTAACGCCGTCTGTAAGAAGGGCAAAATGAAAAGAGTGTTCTCTACAAAACGAGGGAAAACACGTCGACTAGTTGGAAAGCATGGCCGGTTGAAAGTTGTCGCGTCACACGTGCCTCAAAAGCATGGCATGTACATCTCGGATTTATTTACCACTCTGATTGACTCCAAATGGCGGTGGATCTCCTTTGTTTATATTTTAATGTATTCTGGCAGCTGGGTTTTATTTAGTCTGCTTTGGTGGCTTATAACCCATTTACGCGGTGAGAAGTTCTGCGTGGACAACGTTGATTCTTTCATCAGCGCTTTCCTATTTTCATTAGAAACTCAAACTACAATTGGATACGGAGGAAGGCAAATTACGCCCGAATGTCCCGAAGCTGTACTTTTACTGAATGTGCAGTCTCTGATTGGATTTATAATAGGTGCATTTATGTTAGGTCTTGTTTTCGCCAAGCTTTCGCGACCAAGAAATCGTGCTGAGACAATACTCTTCTCTCGAAACGCAGTGGTTGCATTACGTGACGGGAAGATGTGTCTGATGTTCAGGGTTGGAGACGTGCGTAAAAGTCAAATACTGGAGGCTCACGTTCGAGTGCAACTCTTTCGGAAAAGAAGTACTAGAGAAGGCCTACAATTGCCATTTTATCAACAGAATTTGCCAGTTGGAGTAGACTGGTTGTGTGAGGAAAATCCAGTGGACAGCATTCTCTTCCTTATCATGCCACTCACGATAGTTCATGTCATCGATGAAAACAGTCCGTTTTATGAAATGCACCCTCAAGAACTCTCCAGTTGTGACTTCGAGATCGTGGTGATTCTCGAAGGCTCGATCGAGTCAACTAGCATGGTTGTGCAAGCTAGGACTTCTTATGTTGGAGACGAAATATTATGGGGTCATGAATTCGTTTGCACGACGGACGAAAGCAAATGGAAGTCGGGTCGCTATCGAGTCGATTTCTCAGTGTTTGACGACACCCGAGTTGTTCCCGAGACGCCTCAGGTTTCTGCTAAGGACTATTACGAGGGGAAAATGTTTAGAGCAATGTCCGAAGCCTCTTTGCTGACTGCAGAAATGCAAGAAAATGCTGACCAAGACTCAGACGCCAATGGAAGTCTTGCTGATCGAGCTTTTGAAAGATCTCGCGATACTTTTGTTGTTGATCTCGATAACGGAAGTTATGCTCTCGACTTTATCTAGTTAAATCTTTTTGATACAAAGTTATCGTTTACAAGAGCATCTCTAATATAAAGGTTAAACAATACCCACAAAGTAAAACTACCATTTAGTTATGAAAATTACTATTTTCGTTCCTCCATGTGAATCGCGTGACATTGCTCTATTTTGTCGGCTCAGTGTTTTGCTGCGTGACAGCTGTTTTGAGGCCGCAACTACCCTAGGTTAATTTATTATCTTGTTGTCGAAACCGCAAATGACAACGTATCCTACTAAAGATCGCACCTTCTTACAGTATTGCTGGCTGCTGGCTAAAAACTCTCTTAAAAGAGGCTTATACAAAAAACATCGTGCTAATTGAAAAAGGTAATATGATATTTCGCATGACAACACCCAACAGAACAAAAATTGAAACTAATTGTTCGAACCTCGTGCAGTTGCCAACACCTGACAACTTGATAATGATAATCTCATAACAGTTTGTCAGGAGAATATTTTGTTTTCAAAATTACTATATTTTTATTGGCACTGGTCGCATTCATCCAAACGATTTGCGTCGAAcagaatgcgaaaaattcagaacaattttcacacaaaaatgaggcttgtcagttaattagcatttatataaaagaataataattgg

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q4TZY1	ATP-sensitive inward rectifier potassium channel 12 OS=Bos taurus OX=9913 GN=KCNJ12 PE=2 SV=1
F1NHE9	ATP-sensitive inward rectifier potassium channel 12 OS=Gallus gallus OX=9031 GN=KCNJ12 PE=1 SV=1
Q14500	ATP-sensitive inward rectifier potassium channel 12 OS=Homo sapiens OX=9606 GN=KCNJ12 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001027 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF17655 all species →	IRK_C	Inward rectifier potassium channel C-terminal domain	Domain	Interproscan
PF01007 all species →	IRK	Inward rectifier potassium channel transmembrane domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR016449 all species →	Family	Potassium channel, inwardly rectifying, Kir	Interproscan
IPR041647 all species →	Domain	Inward rectifier potassium channel, C-terminal	Interproscan
IPR040445 all species →	Domain	Potassium channel, inwardly rectifying, transmembrane domain	Interproscan
IPR014756 all species →	Homologous_superfamily	Immunoglobulin E-set	Interproscan
IPR013518 all species →	Homologous_superfamily	Potassium channel, inwardly rectifying, Kir, cytoplasmic	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11767 all species →	INWARD RECTIFIER POTASSIUM CHANNEL	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005242 all species →	Molecular Function	inward rectifier potassium channel activity	Interproscan
GO:0006813 all species →	Biological Process	potassium ion transport	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0005886 all species →	Cellular Component	plasma membrane	Interproscan
GO:0034765 all species →	Biological Process	regulation of monoatomic ion transmembrane transport	Interproscan
GO:1990573 all species →	Biological Process	potassium ion import across plasma membrane	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K05330	KCNJN; potassium inwardly-rectifying channel subfamily J, other	-	Ion channels	ko04040	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Co-expression network

Genes whose expression across the transcriptome samples of Acropora florida tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.

No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.

Single-cell expression

Whether this gene can be visualised in the single-cell atlases of Acropora florida, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.

No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.

Epigenetic marks

Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.

No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.

What you can do with this gene

Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.

Analysis	What it does	Status
Primer design	Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed.	template found	open →
BLAST	Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start.	template found	open →
Expression heatmap	Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it.	no expression matrix	–
Gene family / orthogroup	Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue.		open →
Gene set analysis	Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it.		open →