Gene detail

Detailed information of aflo_s0033.g33.t3 in Acropora florida

Genomic Location: sc0000033_pilon:581404...615770
NR annotation: XP_044174846.1, protocadherin Fat 4-like isoform X2 [Acropora millepora]

Gene Structure

More details in Jbrowse

Sequence

CDS

aflo_s0033.g33.t3

ATGTCGGCGTCCGACCTTGGTCATCCAACACGCCGAACATTTATTGATGTCATAGTTAACGTGATGGATGTCAACGATAATTCACCTGTGTTAAACCCAAGGACTGTCCAAGTCTCGCTTTCCGAGGGAACTGCTCCTGGTACCTTTGTTGCTCAGCTTAAGGCAACCGACGCTGATTCAGATGCGAACGGGAACGTAACGTATCACATCGTGGAAGGCGGGGTCAACAAGTTCATTATAGACAATGTGACAGGCGTCATCAGAACTACTGCGGCTTTCGATAGGGAATCTGGTACAAATGAGTACACGCTTGTTGTAAAGGTAAAAGACAATGCACCACATCCACGAGCTGACATTGGAATTGTTACTGTCCGCATCCACAACACGAACGAACATGCGCCGGTCATATTACCCTCATCTTACATAGCAGGTGTCTACAAAGAATCAACTTATTATTCACTTGTGATTACAATAAAGGCCTCTGACGAAGACTTTGACCCCAATGCAGTCATATCCCACTTTGTCGTTGGAGTCAGTGCTTCTGATGGCGAGAGAACATCAACTAACCCTGCAACTGTAGACATATTCCTTTTGCGCGATGAAGATGCTGTCAATTTAACGACAGGCATTCAACCAATGGAGATAACGAGAAAGAGACAAGAGTTTATCGGGATGCTCGAGTCAATAACAACAGGAAAGGCTTTTATCAAGCATTTAGCGCCACAAGACGAAACAAACATGACATCAGTGACTTTTCACGTAGTCAAGAATAAAACGGTGTTAACAGGCTCAGAAATTATAAGCTACCTTACAGCCAACAAGGAGATCTTCGTTGCAATTTATGAGAATTGGAAAATTCAAACCTACCAGGTCTACCAGAGCCCTGTACGTGTGGTCTCCGAGCCGCAGAAATCAGTGGAAGATGGGGATTTGTCAGCCGTAGCCGGGGCAATGATTTGCTTAGGAGTGCTGATCGGTATCAGCTCTGTTATTCTGCTATTCACACTCATTCGttttaaactgcgcaaaaatatccctgtattaGGAACTGCTCCTGGTACCTTTGTTGCTCAGCTTAAGGCAACCGACGCTGATTCAGATGCGAACGGGAACGTAACGTATCACATCGTGGAAGGCGGGGTCAACAAGTTCATTATAGACAATGTGACAGGCGCCATCAGCACTACTGCCGCTTTCGATAGGGAACCTGGTACGAATGAGTACATGCTTGTTGTAAAGGTAAAAGACAATGCACCACATCCACGAGCTGACATTGGAATTGTTACTGTCCGCATCCACAAAACGAACGAACATGCGCCGGTCATATTACCCTCATCCTACATAGCAGGTGTCTACAAAGAATCAACTTATTATTCACTTGTGACTAAAATAAAGGCCTCTGACGAAGACTTTGACCCCAATGCAGTCATATCCCACTTTGTCGTTGGAGGTGATGGTGTTGATATGTTTCACGTGGAGCCAGACTCTGGTCACGTGCGAGTCGCTTGTTCAATGATTGATAAAGAAGGTTCAAAGTTCACATTACAAGTCAGTGCTTCTGATGGCGAGAGAACATCAACTAACCCTGCAACTGTAGACATATTCCTTTTGCGCGATGAAGATGCTGTCATTTTAACGACAGGCATTCAACCAATGGAGATAACGAGAAAGAGACAAGAGTTTATCGGGATGCTCGACTTCTCGCCTAATCTAAACGCAATTGTGAGAGACCAAGTTGAAAGTGCGCAGGAAGCACAAGAAGTCATAGTCCACCTTCCAGGTGAGGACAATAGTTCCCTGGAAGGAAGTGAATGTTCTGATGAGGTCATCACGAACTTCGGTGCCGCCGTACATATGGCGGCGTGTCGCGAGAAAGACTCTATCGATCTACGAGATGAAAAAGCTCAGGAATGGTTTTTTCCTACACCTCCAATAGGACCATcggcaccggcaccggcaccggcaccACCCGATCCCGAGTCCGAAAATGAGTCAATTGCTTCCGAATCCGTATCTAACGAGAGCAATGTGATAGCCGACGCTACGGAGTTTTTCAGACAGGGGGAATATTTCCCCGAGACTTTTCGATCGGGCGAATAG

Transcript

aflo_s0033.g33.t3

GTATTTTTTCCTTGAATAATCAAACTGGAGTATTGTCGCCGTCCAGTTCACTCGATTACGAGACCACTCCTCAGTACGTGTTGAACATGTCGGCGTCCGACCTTGGTCATCCAACACGCCGAACATTTATTGATGTCATAGTTAACGTGATGGATGTCAACGATAATTCACCTGTGTTAAACCCAAGGACTGTCCAAGTCTCGCTTTCCGAGGGAACTGCTCCTGGTACCTTTGTTGCTCAGCTTAAGGCAACCGACGCTGATTCAGATGCGAACGGGAACGTAACGTATCACATCGTGGAAGGCGGGGTCAACAAGTTCATTATAGACAATGTGACAGGCGTCATCAGAACTACTGCGGCTTTCGATAGGGAATCTGGTACAAATGAGTACACGCTTGTTGTAAAGGTAAAAGACAATGCACCACATCCACGAGCTGACATTGGAATTGTTACTGTCCGCATCCACAACACGAACGAACATGCGCCGGTCATATTACCCTCATCTTACATAGCAGGTGTCTACAAAGAATCAACTTATTATTCACTTGTGATTACAATAAAGGCCTCTGACGAAGACTTTGACCCCAATGCAGTCATATCCCACTTTGTCGTTGGAGTCAGTGCTTCTGATGGCGAGAGAACATCAACTAACCCTGCAACTGTAGACATATTCCTTTTGCGCGATGAAGATGCTGTCAATTTAACGACAGGCATTCAACCAATGGAGATAACGAGAAAGAGACAAGAGTTTATCGGGATGCTCGAGTCAATAACAACAGGAAAGGCTTTTATCAAGCATTTAGCGCCACAAGACGAAACAAACATGACATCAGTGACTTTTCACGTAGTCAAGAATAAAACGGTGTTAACAGGCTCAGAAATTATAAGCTACCTTACAGCCAACAAGGAGATCTTCGTTGCAATTTATGAGAATTGGAAAATTCAAACCTACCAGGTCTACCAGAGCCCTGTACGTGTGGTCTCCGAGCCGCAGAAATCAGTGGAAGATGGGGATTTGTCAGCCGTAGCCGGGGCAATGATTTGCTTAGGAGTGCTGATCGGTATCAGCTCTGTTATTCTGCTATTCACACTCATTCGttttaaactgcgcaaaaatatccctgtattaGGAACTGCTCCTGGTACCTTTGTTGCTCAGCTTAAGGCAACCGACGCTGATTCAGATGCGAACGGGAACGTAACGTATCACATCGTGGAAGGCGGGGTCAACAAGTTCATTATAGACAATGTGACAGGCGCCATCAGCACTACTGCCGCTTTCGATAGGGAACCTGGTACGAATGAGTACATGCTTGTTGTAAAGGTAAAAGACAATGCACCACATCCACGAGCTGACATTGGAATTGTTACTGTCCGCATCCACAAAACGAACGAACATGCGCCGGTCATATTACCCTCATCCTACATAGCAGGTGTCTACAAAGAATCAACTTATTATTCACTTGTGACTAAAATAAAGGCCTCTGACGAAGACTTTGACCCCAATGCAGTCATATCCCACTTTGTCGTTGGAGGTGATGGTGTTGATATGTTTCACGTGGAGCCAGACTCTGGTCACGTGCGAGTCGCTTGTTCAATGATTGATAAAGAAGGTTCAAAGTTCACATTACAAGTCAGTGCTTCTGATGGCGAGAGAACATCAACTAACCCTGCAACTGTAGACATATTCCTTTTGCGCGATGAAGATGCTGTCATTTTAACGACAGGCATTCAACCAATGGAGATAACGAGAAAGAGACAAGAGTTTATCGGGATGCTCGACTTCTCGCCTAATCTAAACGCAATTGTGAGAGACCAAGTTGAAAGTGCGCAGGAAGCACAAGAAGTCATAGTCCACCTTCCAGGTGAGGACAATAGTTCCCTGGAAGGAAGTGAATGTTCTGATGAGGTCATCACGAACTTCGGTGCCGCCGTACATATGGCGGCGTGTCGCGAGAAAGACTCTATCGATCTACGAGATGAAAAAGCTCAGGAATGGTTTTTTCCTACACCTCCAATAGGACCATcggcaccggcaccggcaccggcaccACCCGATCCCGAGTCCGAAAATGAGTCAATTGCTTCCGAATCCGTATCTAACGAGAGCAATGTGATAGCCGACGCTACGGAGTTTTTCAGACAGGGGGAATATTTCCCCGAGACTTTTCGATCGGGCGAATAGGGTTACTTTGATGGTATCGTACAAAACGGGTTGGCGTAGGGATCAACGATGGCAAGCTTGAACAACCCCTACATCACGGCAGCTCCGAGGATTCCATCAACTGAATGCTCATTTCTGACACAATTTTCTTTGAACGAAAACAAAACCGACCTCTAAGATGTGTAAATTGACTCAAACAGGGCTGGCAGCTGAGACTTTTATACAGCTAGTGACACACGTTTTTCAGCAGTTTATACAAGAAAAAAAAGAAGGCACGCCTTGCATCTTTTTCGATGACAAGGAAATCTTTCATACGGTAGCTCTATGAATATTGCATCAAAGATTTTATTAATCCCCAAAAGTCAAATTTTTCCTGTCTCGGGCAAGTAGGCAGTTCAATTCACTAAAAAGTCTCATAAGCCGTATATTTTTGTACAAATATCTTTTGATAAATTAGAGTTCACGGAAAGGAAAAAACATACGTATCCGTAGGCAGACGAAGATGGCAAATACCACCCAGTTATTCGAAAAAAAACGTCGAAGAAAAAATCATGTGTAACAATTGTGACTTGATCCTGAAGTTCAAATTTTGCGAAACTAAAGACGCACAAACCAGAGCAGACCATCGTAGTATATTTTAAAATAAGTTCATGACTTTTTAATTAATGAAAATAAAAAAAAATT

Protein

Uniprot

Uniprot term	Description
G5EDK5	Cadherin EGF LAG seven-pass G-type receptor fmi-1 OS=Caenorhabditis elegans OX=6239 GN=fmi-1 PE=1 SV=1
Q14517	Protocadherin Fat 1 OS=Homo sapiens OX=9606 GN=FAT1 PE=1 SV=2
Q8TDW7	Protocadherin Fat 3 OS=Homo sapiens OX=9606 GN=FAT3 PE=1 SV=3

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00028	Cadherin	Cadherin domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR015919	Homologous_superfamily	Cadherin-like superfamily	Interproscan
IPR002126	Domain	Cadherin-like	Interproscan
IPR039808	Family	Cadherin	Interproscan
IPR020894	Conserved_site	Cadherin conserved site	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24027	CADHERIN-23	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005509	Molecular Function	calcium ion binding	Interproscan
GO:0016020	Cellular Component	membrane	Interproscan
GO:0007156	Biological Process	homophilic cell adhesion via plasma membrane adhesion molecules	Interproscan
GO:0000902	Biological Process	cell morphogenesis	Interproscan
GO:0005912	Cellular Component	adherens junction	Interproscan
GO:0007043	Biological Process	cell-cell junction assembly	Interproscan
GO:0007275	Biological Process	multicellular organism development	Interproscan
GO:0016339	Biological Process	calcium-dependent cell-cell adhesion via plasma membrane cell adhesion molecules	Interproscan
GO:0016342	Cellular Component	catenin complex	Interproscan
GO:0034332	Biological Process	adherens junction organization	Interproscan
GO:0044331	Biological Process	cell-cell adhesion mediated by cadherin	Interproscan
GO:0045296	Molecular Function	cadherin binding	Interproscan
GO:0098609	Biological Process	cell-cell adhesion	Interproscan
GO:0098742	Biological Process	cell-cell adhesion via plasma-membrane adhesion molecules	Interproscan
GO:0005886	Cellular Component	plasma membrane	Interproscan
GO:0007155	Biological Process	cell adhesion	Interproscan